CoDNaS: a database of conformational diversity in the native state of proteins. - Alexander Miguel Monzon; Ezequiel I. Juritz; María Silvina Fornasari; Gustavo D. Parisi (Bioinform., 2013)

CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state. - Alexander Miguel Monzon; Cristian Oscar Rohr; María Silvina Fornasari; Gustavo D. Parisi (Database J. Biol. Databases Curation, 2016)

Evolutionary Conserved Positions Define Protein Conformational Diversity. - Tadeo E. Saldaño; Alexander Miguel Monzon; Gustavo D. Parisi; Sebastian Fernandez Alberti (PLoS Comput. Biol., 2016)

Conformational diversity analysis reveals three functional mechanisms in proteins. - Alexander Miguel Monzon; Diego J. Zea; María Silvina Fornasari; Tadeo E. Saldaño; Sebastian Fernandez Alberti; Silvio C. E. Tosatto; Gustavo D. Parisi (PLoS Comput. Biol., 2017)

Reflections on a journey: a retrospective of the ISCB Student Council symposium series. - Mehedi Hassan; Aishwarya Alex Namasivayam; Dan F. DeBlasio; Nazeefa Fatima; Benjamin Siranosian; R. Gonzalo Parra; Bart Cuypers; Sayane Shome; Alexander Miguel Monzon; Julien Fumey; Farzana Rahman (BMC Bioinform., 2018)

Large scale analysis of protein conformational transitions from aqueous to non-aqueous media. - Ana Julia Velez Rueda; Alexander Miguel Monzon; Sebastián M. Ardanaz; Luis E. Iglesias; Gustavo D. Parisi (BMC Bioinform., 2018)

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. - Damiano Piovesan; Francesco Tabaro; Lisanna Paladin; Marco Necci; Ivan Micetic; Carlo Camilloni; Norman E. Davey; Zsuzsanna Dosztányi; Bálint Mészáros; Alexander Miguel Monzon; Gustavo D. Parisi; Éva Schád; et al. (Nucleic Acids Res., 2018)

On the dynamical incompleteness of the Protein Data Bank. - Cristina Marino Buslje; Alexander Miguel Monzon; Diego Javier Zea; María Silvina Fornasari; Gustavo D. Parisi (Briefings Bioinform., 2019)

Revenant: a database of resurrected proteins. - Matias Sebastian Carletti; Alexander Miguel Monzon; Emilio Garcia-Rios; Guillermo I. Benítez; Layla Hirsh; María Silvina Fornasari; Gustavo D. Parisi (Database J. Biol. Databases Curation, 2020)

DisProt: intrinsic protein disorder annotation in 2020. - András Hatos; Borbála Hajdu-Soltész; Alexander Miguel Monzon; Nicolas Palopoli; Lucía Álvarez; Burcu Aykaç Fas; Claudio Bassot; Guillermo I. Benítez; Martina Bevilacqua; Anastasia Chasapi; Lucía B. Chemes; Norman E. Davey; et al. (Nucleic Acids Res., 2020)

Assessing predictors for new post translational modification sites: A case study on hydroxylation. - Damiano Piovesan; András Hatos; Giovanni Minervini; Federica Quaglia; Alexander Miguel Monzon; Silvio C. E. Tosatto (PLoS Comput. Biol., 2020)

RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures. - Lisanna Paladin; Martina Bevilacqua; Sara Errigo; Damiano Piovesan; Ivan Micetic; Marco Necci; Alexander Miguel Monzon; Maria Laura Fabre; José Luis López; Juliet F. Nilsson; Javier Ríos; Pablo Lorenzano Menna; et al. (Nucleic Acids Res., 2021)

MobiDB: intrinsically disordered proteins in 2021. - Damiano Piovesan; Marco Necci; Nahuel Escobedo; Alexander Miguel Monzon; András Hatos; Ivan Micetic; Federica Quaglia; Lisanna Paladin; Pathmanaban Ramasamy; Zsuzsanna Dosztányi; Wim F. Vranken; Norman E. Davey; et al. (Nucleic Acids Res., 2021)

RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles. - Damiano Clementel; Alessio Del Conte; Alexander Miguel Monzon; Giorgia F. Camagni; Giovanni Minervini; Damiano Piovesan; Silvio C. E. Tosatto (Nucleic Acids Res., 2022)

FuzDB: a new phase in understanding fuzzy interactions. - András Hatos; Alexander Miguel Monzon; Silvio C. E. Tosatto; Damiano Piovesan; Mónika Fuxreiter (Nucleic Acids Res., 2022)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure. - Nahuel Escobedo; Ronaldo Romario Tunque Cahui; Gastón Caruso; Emilio Garcia-Rios; Layla Hirsh; Alexander Miguel Monzon; Gustavo D. Parisi; Nicolas Palopoli (Bioinform., 2022)

CAFA-evaluator: A Python Tool for Benchmarking Ontological Classification Methods. - Damiano Piovesan; Davide Zago; Parnal Joshi; M. Clara De Paolis Kaluza; Alexander Miguel Monzon; Walter Reade; Iddo Friedberg; Predrag Radivojac; Silvio C. E. Tosatto (CoRR, 2023)

MobiDB: 10 years of intrinsically disordered proteins. - Damiano Piovesan; Alessio Del Conte; Damiano Clementel; Alexander Miguel Monzon; Martina Bevilacqua; Maria Cristina Aspromonte; Javier Iserte; Fernando E. Orti; Cristina Marino Buslje; Silvio C. E. Tosatto (Nucleic Acids Res., 2023)

RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics. - Alessio Del Conte; Alexander Miguel Monzon; Damiano Clementel; Giorgia F. Camagni; Giovanni Minervini; Silvio C. E. Tosatto; Damiano Piovesan (Bioinform., 2023)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)