Measuring Cognitive Functions: Hurdles in the Development of the NeuroPsychological Testing Ontology. - Alexander P. Cox; Mark Jensen; Alan Ruttenberg; Kinga Szigeti; Alexander D. Diehl (ICBO, 2013)

Representing Disease Courses: An Application of the Neurological Disease Ontology to Multiple Sclerosis Typology. - Mark Jensen; Alexander P. Cox; Barry Smith 001; Alexander D. Diehl (ICBO, 2013)

The neurological disease ontology. - Mark Jensen; Alexander P. Cox; Naveed Chaudhry; Marcus Ng; Donat Sule; William D. Duncan; Patrick Ray; Bianca Weinstock-Guttman; Barry Smith 001; Alan Ruttenberg; Kinga Szigeti; Alexander D. Diehl (J. Biomed. Semant., 2013)

Applications of OBI 'assay'. - Mark Jensen; Alexander P. Cox; Jonathan P. Bona; William D. Duncan; Patrick L. Ray; Alexander D. Diehl (ICBO, 2014)

An Ontological Representation and Analysis of Patient-reported and Clinical Outcomes for Multiple Sclerosis. - Mark Jensen; Alexander P. Cox; Patrick Ray; Barbara E. Teter; Bianca Weinstock-Guttman; Alan Ruttenberg; Alexander D. Diehl (ICBO, 2014)

The Ontological Treatment of Sight and Blindness. - Patrick Ray; Alexander P. Cox; Mark Jensen; Alexander D. Diehl (ICBO, 2014)

The Space Object Ontology. - Alexander P. Cox; Christopher K. Nebelecky; Ronald Rudnicki; William A. Tagliaferri; John L. Crassidis; Barry Smith 001 (FUSION, 2016)

Representing vision and blindness. - Patrick L. Ray; Alexander P. Cox; Mark Jensen; Travis Allen; William D. Duncan; Alexander D. Diehl (J. Biomed. Semant., 2016)

Representation of Protein Aggregates in an Ontological Framework. - Lauren Wishnie; Alexander P. Cox; Alexander D. Diehl (ICBO, 2019)

Conceptual Space Modeling for Space Event Characterization. - Jeremy R. Chapman; David Kasmier; David Limbaugh; Stephen R. Gagnon; John L. Crassidis; James Llinas; Barry Smith 001; Alexander P. Cox (FUSION, 2020)

Foundations for a Realism-Based Ontology of Protein Aggregates. - Lauren Wishnie; Alexander P. Cox; Alexander D. Diehl; Werner Ceusters (ICBO/ODLS, 2020)

Recent Refinements of the NeuroPsychological Testing Ontology. - Alexander P. Cox; Kiernan L. Johnson; Lauren Wishnie; Aaron S. Kemp; Jonathan P. Bona; Alexander D. Diehl (ICBO, 2021)

Enhancing Childhood Nutrition Data with Open Biomedical Ontologies. - Jonathan P. Bona; Alexander D. Diehl; Alexander P. Cox; Aaron S. Kemp; Linda Larson-Prior (ICBO, 2022)

The Common Core Ontologies. - Mark Jensen; Giacomo De Colle; Sean Kindya; Cameron More; Alexander P. Cox; John Beverley (FOIS, 2024)