PseudoBase: a database with RNA pseudoknots. - F. H. D. van Batenburg; Alexander P. Gultyaev; C. W. A. Pleij; J. Ng; J. Oliehoek (Nucleic Acids Res., 2000)

PseudoBase: structural information on RNA pseudoknots. - F. H. D. van Batenburg; Alexander P. Gultyaev; C. W. A. Pleij (Nucleic Acids Res., 2001)

An RNA conformational shift in recent H5N1 influenza A viruses. - Alexander P. Gultyaev; Hans A. Heus; René C. L. Olsthoorn (Bioinform., 2007)

PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots. - Michela Taufer; Abel Licon; Roberto Araiza; David Mireles; F. H. D. van Batenburg; Alexander P. Gultyaev; Ming-Ying Leung (Nucleic Acids Res., 2009)

Detection of structural constraints and conformational transitions in the influenza virus RNA genome using structure predictions and mutual information calculations. - Alexander P. Gultyaev; René C. L. Olsthoorn; Monique Spronken; Ron Fouchier (IWBBIO, 2014)

Tospovirus ambisense genomic RNA segments use almost complete repertoire of stable tetraloops in the intergenic region. - Max T. B. Clabbers; René C. L. Olsthoorn; Alexander P. Gultyaev (Bioinform., 2014)

Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). - Irene Martorelli; Leon S. Helwerda; Jesse Kerkvliet; Sofia I. F. Gomes; Jorinde Nuytinck; Chivany R. A. van der Werff; Guus J. Ramackers; Alexander P. Gultyaev; Vincent S. F. T. Merckx; Fons J. Verbeek (J. Integr. Bioinform., 2020)

A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions. - Alan Zammit; Leon S. Helwerda; René C. L. Olsthoorn; Fons J. Verbeek; Alexander P. Gultyaev (Bioinform., 2021)