ProSpect: An R Package for Analyzing SELDI Measurements Identifying Protein Biomarkers. - Andreas Quandt; Alexander Ploner; Chuen Seng Tan; Janne Lehtiö; Yudi Pawitan (CompLife, 2005)

False discovery rate, sensitivity and sample size for microarray studies. - Yudi Pawitan; Stefan Michiels; Serge Koscielny; Arief Gusnanto; Alexander Ploner (Bioinform., 2005)

Bias in the estimation of false discovery rate in microarray studies. - Yudi Pawitan; Karuturi R. Krishna Murthy; Stefan Michiels; Alexander Ploner (Bioinform., 2005)

Correlation test to assess low-level processing of high-density oligonucleotide microarray data. - Alexander Ploner; Lance D. Miller; Per Hall; Jonas Bergh; Yudi Pawitan (BMC Bioinform., 2005)

Estimation of false discovery proportion under general dependence. - Yudi Pawitan; Stefano Calza; Alexander Ploner (Bioinform., 2006)

Multidimensional local false discovery rate for microarray studies. - Alexander Ploner; Stefano Calza; Arief Gusnanto; Yudi Pawitan (Bioinform., 2006)

Finding regions of significance in SELDI measurements for identifying protein biomarkers. - Chuen Seng Tan; Alexander Ploner; Andreas Quandt; Janne Lehtiö; Yudi Pawitan (Bioinform., 2006)

Detecting differential expression in microarray data: comparison of optimal procedures. - Elena Perelman; Alexander Ploner; Stefano Calza; Yudi Pawitan (BMC Bioinform., 2007)

Correlating gene and protein expression data using Correlated Factor Analysis. - Chuen Seng Tan; Agus Salim; Alexander Ploner; Janne Lehtiö; Kee Seng Chia; Yudi Pawitan (BMC Bioinform., 2009)

Partial least squares and logistic regression random-effects estimates for gene selection in supervised classification of gene expression data. - Arief Gusnanto; Alexander Ploner; Farag Shuweihdi; Yudi Pawitan (J. Biomed. Informatics, 2013)