Local cortical injections of glutamate and noradrenaline alter high-frequency (245 Hz) neuronal activity in rat cortex. - Brent A. Field; Alexander R. Pico; Richard T. Marrocco (Neurocomputing, 1999)

GenMAPP 2: new features and resources for pathway analysis. - Nathan Salomonis; Kristina Hanspers; Alexander C. Zambon; Karen Vranizan; Steven C. Lawlor; Kam D. Dahlquist; Scott Doniger; Joshua M. Stuart; Bruce R. Conklin; Alexander R. Pico (BMC Bioinform., 2007)

Presenting and exploring biological pathways with PathVisio. - Martijn P. van Iersel; Thomas Kelder; Alexander R. Pico; Kristina Hanspers; Susan L. Coort; Bruce R. Conklin; Chris T. A. Evelo (BMC Bioinform., 2008)

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system. - Alexander R. Pico; Ivan V. Smirnov; Jeffrey S. Chang; Ru-Fang Yeh; Joseph Wiemels; John K. Wiencke; Tarik Tihan; Bruce R. Conklin; Margaret R. Wrensch (Nucleic Acids Res., 2009)

Alternative Splicing in the Differentiation of Human Embryonic Stem Cells into Cardiac Precursors. - Nathan Salomonis; Brandon Nelson; Karen Vranizan; Alexander R. Pico; Kristina Hanspers; Allan Kuchinsky; Linda Ta; Mark Mercola; Bruce R. Conklin (PLoS Comput. Biol., 2009)

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. - Martijn P. van Iersel; Alexander R. Pico; Thomas Kelder; Jianjiong Gao; Isaac Ho; Kristina Hanspers; Bruce R. Conklin; Chris T. A. Evelo (BMC Bioinform., 2010)

GO-Elite: a flexible solution for pathway and ontology over-representation. - Alexander C. Zambon; Stan Gaj; Isaac Ho; Kristina Hanspers; Karen Vranizan; Chris T. A. Evelo; Bruce R. Conklin; Alexander R. Pico; Nathan Salomonis (Bioinform., 2012)

Mosaic: making biological sense of complex networks. - Chao Zhang 032; Kristina Hanspers; Allan Kuchinsky; Nathan Salomonis; Dong Xu 002; Alexander R. Pico (Bioinform., 2012)

WikiPathways: building research communities on biological pathways. - Thomas Kelder; Martijn P. van Iersel; Kristina Hanspers; Martina Kutmon; Bruce R. Conklin; Chris T. A. Evelo; Alexander R. Pico (Nucleic Acids Res., 2012)

Cytoscape App Store. - Samad Lotia; Jason Montojo; Yue Dong; Gary D. Bader; Alexander R. Pico (Bioinform., 2013)

NOA: a cytoscape plugin for network ontology analysis. - Chao Zhang 032; Jiguang Wang; Kristina Hanspers; Dong Xu 002; Luonan Chen; Alexander R. Pico (Bioinform., 2013)

BridgeDb app: unifying identifier mapping services for Cytoscape. - Jianjiong Gao; Chao Zhang 032; Martijn P. van Iersel; Li Zhang; Dong Xu 002; Nikolaus Schultz; Alexander R. Pico (F1000Research, 2014)

enhancedGraphics: a Cytoscape app for enhanced node graphics. - John H. Morris; Allan Kuchinsky; Thomas E. Ferrin; Alexander R. Pico (F1000Research, 2014)

The Cytoscape app article collection. - Alexander R. Pico; Gary D. Bader; Barry Demchak; Oriol Guitart Pla; Timothy Hull; William J. R. Longabaugh; Christian Tannus Lopes; Samad Lotia; Piet Molenaar; Jason Montojo; John H. Morris; Keiichiro Ono; et al. (F1000Research, 2014)

CyAnimator: Simple Animations of Cytoscape Networks. - John H. Morris; Vijay Dhameliya; Steven Federowicz; Alexander R. Pico; Thomas E. Ferrin (F1000Research, 2015)

PSFC: a Pathway Signal Flow Calculator App for Cytoscape. - Lilit Nersisyan; Graham Johnson; Megan Riel-Mehan; Alexander R. Pico; Arsen Arakelyan (F1000Research, 2015)

PathVisio 3: An Extendable Pathway Analysis Toolbox. - Martina Kutmon; Martijn P. van Iersel; Anwesha Bohler; Thomas Kelder; Nuno Nunes 002; Alexander R. Pico; Chris T. A. Evelo (PLoS Comput. Biol., 2015)

WikiPathways: capturing the full diversity of pathway knowledge. - Martina Kutmon; Anders Riutta; Nuno Nunes 002; Kristina Hanspers; Egon L. Willighagen; Anwesha Bohler; Jonathan Mélius; Andra Waagmeester; Sravanthi R. Sinha; Ryan A. Miller; Susan L. Coort; Elisa Cirillo; et al. (Nucleic Acids Res., 2016)

Reactome from a WikiPathways Perspective. - Anwesha Bohler; Guanming Wu; Martina Kutmon; Leontius Adhika Pradhana; Susan L. Coort; Kristina Hanspers; Robin Haw; Alexander R. Pico; Chris T. A. Evelo (PLoS Comput. Biol., 2016)

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. - Andra Waagmeester; Martina Kutmon; Anders Riutta; Ryan A. Miller; Egon L. Willighagen; Chris T. A. Evelo; Alexander R. Pico (PLoS Comput. Biol., 2016)

The Cytoscape Automation app article collection. - Barry Demchak; David Otasek; Alexander R. Pico; Gary D. Bader; Keiichiro Ono; Brett Settle; Eric Sage; John H. Morris; William J. R. Longabaugh; Christian Tannus Lopes; Michael Kucera; Adam Treister; et al. (F1000Research, 2018)

Identifier Mapping in Cytoscape: idmapper. - Adam Treister; Alexander R. Pico (F1000Research, 2018)

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. - Denise N. Slenter; Martina Kutmon; Kristina Hanspers; Anders Riutta; Jacob Windsor; Nuno Nunes 002; Jonathan Mélius; Elisa Cirillo; Susan L. Coort; Daniela Digles; Friederike Ehrhart; Pieter Giesbertz; et al. (Nucleic Acids Res., 2018)

RCy3: Network biology using Cytoscape from within R. - Julia A. Gustavsen; Shraddha Pai; Ruth Isserlin; Barry Demchak; Alexander R. Pico (F1000Research, 2019)

Introducing R as a smart version of calculators enables beginners to explore it on their own. - Krishna Choudhary; Alexander R. Pico (F1000Research, 2021)

WikiPathways: connecting communities. - Marvin Martens; Ammar Ammar; Anders Riutta; Andra Waagmeester; Denise N. Slenter; Kristina Hanspers; Ryan A. Miller; Daniela Digles; Elisson N. Lopes; Friederike Ehrhart; Lauren J. Dupuis; Laurent A. Winckers; et al. (Nucleic Acids Res., 2021)

Ten simple rules for creating reusable pathway models for computational analysis and visualization. - Kristina Hanspers; Martina Kutmon; Susan L. Coort; Daniela Digles; Lauren J. Dupuis; Friederike Ehrhart; Finterly Hu; Elisson N. Lopes; Marvin Martens; Nhung Pham; Woosub Shin; Denise N. Slenter; et al. (PLoS Comput. Biol., 2021)

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. - John H. Morris; Karthik Soman; Rabia E. Akbas; Xiaoyuan Zhou; Brett Smith; Elaine C. Meng; Conrad C. Huang; Gabriel Cerono; Gundolf Schenk; Angela Rizk-Jackson; Adil Harroud; Lauren M. Sanders; et al. (Bioinform., 2023)

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. - Rudolf T. Pillich; Jing Chen; Christopher Churas; Dylan Fong; Benjamin M. Gyori; Trey Ideker; Klas Karis; Sophie N. Liu; Keiichiro Ono; Alexander R. Pico; Dexter Pratt (Bioinform., 2023)

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. - Jackson Callaghan; Colleen H. Xu; Jiwen Xin; Marco Alvarado Cano; Anders Riutta; Eric Zhou; Rohan Juneja; Yao Yao 007; Madhumita Narayan; Kristina Hanspers; Ayushi Agrawal; Alexander R. Pico; et al. (Bioinform., 2023)