Automated Bond Order Assignment as an Optimization Problem. - Anna Katharina Dehof; Alexander Rurainski; Hans-Peter Lenhof; Andreas Hildebrandt 001 (GCB, 2009)

A new method for the gradient-based optimization of molecular complexes. - Jan Fuhrmann; Alexander Rurainski; Hans-Peter Lenhof; Dirk Neumann 001 (J. Comput. Chem., 2009)

A consensus line search algorithm for molecular potential energy functions. - Alexander Rurainski; Andreas Hildebrandt 001; Hans-Peter Lenhof (J. Comput. Chem., 2009)

BALL - biochemical algorithms library 1.3. - Andreas Hildebrandt 001; Anna Katharina Dehof; Alexander Rurainski; Andreas Bertsch; Marcel Schumann; Nora C. Toussaint; Andreas Moll; Daniel Stöckel; Stefan Nickels; Sabine C. Mueller; Hans-Peter Lenhof; Oliver Kohlbacher (BMC Bioinform., 2010)

A new Lamarckian genetic algorithm for flexible ligand-receptor docking. - Jan Fuhrmann; Alexander Rurainski; Hans-Peter Lenhof; Dirk Neumann 001 (J. Comput. Chem., 2010)

Optimization in bioinformatics. - Alexander Rurainski (2010)

Automated bond order assignment as an optimization problem. - Anna Katharina Dehof; Alexander Rurainski; Quang Bao Anh Bui; Sebastian Böcker; Hans-Peter Lenhof; Andreas Hildebrandt 001 (Bioinform., 2011)

NetworkTrail - a web service for identifying and visualizing deregulated subnetworks. - Daniel Stöckel; Oliver Müller 003; Tim Kehl; Andreas Gerasch; Christina Backes; Alexander Rurainski; Andreas Keller; Michael Kaufmann 001; Hans-Peter Lenhof (Bioinform., 2013)