A bioinformatics analysis of the cell line nomenclature. - Sirarat Sarntivijai; Alexander S. Ade; Brian D. Athey; David J. States (Bioinform., 2008)

Integrating and annotating the interactome using the MiMI plugin for cytoscape. - Jing Gao; Alexander S. Ade; V. Glenn Tarcea; Terry E. Weymouth; Barbara R. Mirel; H. V. Jagadish; David J. States (Bioinform., 2009)

MiSearch adaptive pubMed search tool. - David J. States; Alexander S. Ade; Zachary C. Wright; Aaron V. Bookvich; Brian D. Athey (Bioinform., 2009)

Michigan molecular interactions r2: from interacting proteins to pathways. - V. Glenn Tarcea; Terry E. Weymouth; Alexander S. Ade; Aaron V. Bookvich; Jing Gao; Vasudeva Mahavisno; Zach Wright; Adriane Chapman; Magesh Jayapandian; Arzucan Özgür; Yuanyuan Tian 001; James D. Cavalcoli; et al. (Nucleic Acids Res., 2009)

Metab2MeSH: annotating compounds with medical subject headings. - Maureen A. Sartor; Alexander S. Ade; Zach Wright; David J. States; Gilbert S. Omenn; Brian D. Athey; Alla Karnovsky (Bioinform., 2012)

3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results. - Alexandr A. Kalinin; Ari Allyn-Feuer; Alexander S. Ade; Gordon-Victor Fon; Walter Meixner; David Dilworth; Jeffrey R. de Wet; Gerald A. Higgins; Gen Zheng; Amy Creekmore; John W. Wiley; James E. Verdone; et al. (CVPR Workshops, 2018)