AltAVisT: Comparing alternative multiple sequence alignments. - Burkhard Morgenstern; Sachin Goel; Alexander Sczyrba; Andreas W. M. Dress (Bioinform., 2003)

AGenDA: homology-based gene prediction. - Leila Taher; Oliver Rinner; Saurabh Garg; Alexander Sczyrba; Michael Brudno; Serafim Batzoglou; Burkhard Morgenstern (Bioinform., 2003)

RNA-related tools on the Bielefeld Bioinformatics Server. - Alexander Sczyrba; Jan Krüger; Henning Mersch; Stefan Kurtz; Robert Giegerich (Nucleic Acids Res., 2003)

Genlight: An Interactive System for High-throughput Sequence Analysis and Comparative Genomics. - Michael Beckstette; Alexander Sczyrba; Paul M. Selzer (German Conference on Bioinformatics, 2004)

Genlight: Interactive high-throughput sequence analysis and comparative genomics. - Michael Beckstette; Jens T. Mailänder; Richard J. Marhöfer; Alexander Sczyrba; Enno Ohlebusch; Robert Giegerich; Paul M. Selzer (J. Integr. Bioinform., 2004)

e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. - Jan Krüger; Alexander Sczyrba; Stefan Kurtz; Robert Giegerich (Nucleic Acids Res., 2004)

AGenDA: gene prediction by cross-species sequence comparison. - Leila Taher; Oliver Rinner; Saurabh Garg; Alexander Sczyrba; Burkhard Morgenstern (Nucleic Acids Res., 2004)

IsoSVM - Distinguishing isoforms and paralogs on the protein level. - Michael Spitzer; Stefan Lorkowski; Paul Cullen; Alexander Sczyrba; Georg Fuellen (BMC Bioinform., 2006)

Genome analysis based on EST collections: a clustering pipeline and a database on Xenopus laevis - Alexander Sczyrba (2006)

Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server. - Alexander Sczyrba; Susanne Konermann; Robert Giegerich (Briefings Bioinform., 2008)

GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. - Anna-Lena Lamprecht; Tiziana Margaria; Bernhard Steffen; Alexander Sczyrba; Sven Hartmeier; Robert Giegerich (BMC Bioinform., 2008)

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. - Mohamed El-Kalioby; Mohamed Abouelhoda; Jan Krüger; Robert Giegerich; Alexander Sczyrba; Dennis P. Wall; Peter J. Tonellato (BMC Bioinform., 2012)

Nonlinear Dimensionality Reduction for Cluster Identification in Metagenomic Samples. - Andrej Gisbrecht; Barbara Hammer; Bassam Mokbel; Alexander Sczyrba (IV, 2013)

Automatic discovery of metagenomic structure. - Markus Lux; Alexander Sczyrba; Barbara Hammer (IJCNN, 2015)

MeCorS: Metagenome-enabled error correction of single cell sequencing reads. - Andreas Bremges; Esther Singer; Tanja Woyke; Alexander Sczyrba (Bioinform., 2016)

acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. - Markus Lux; Jan Krüger; Christian Rinke; Irena Maus; Andreas Schlüter; Tanja Woyke; Alexander Sczyrba; Barbara Hammer (BMC Bioinform., 2016)

Analyzing large scale genomic data on the cloud with Sparkhit. - Liren Huang; Jan Krüger; Alexander Sczyrba (Bioinform., 2018)

Common ELIXIR Service for Researcher Authentication and Authorisation. - Mikael Linden; Michal Procházka; Ilkka Lappalainen; Dominik Bucik; Pavel Vyskocil; Martin Kuba; Sami Silén; Peter Belmann; Alexander Sczyrba; Steven J. Newhouse; Ludek Matyska; Tommi H. Nyrönen (F1000Research, 2018)

de.NBI Cloud federation through ELIXIR AAI. - Peter Belmann; Björn Fischer; Jan Krüger; Michal Procházka; Helena Rasche; Manuel Prinz; Maximilian Hanussek; Martin Lang 009; Felix Bartusch; Benjamin Gläßle; Jens Krüger 002; Alfred Pühler; et al. (F1000Research, 2019)

ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom. - Marten Moore; Corinna Wesemann; Nikolaj Gossmann; Arne Sahm; Jan Krüger; Alexander Sczyrba; Karl-Josef Dietz (BMC Bioinform., 2020)

Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. - Nils Hoffmann; Irena Maus; Sebastian Beier; Peter Belmann; Jan Krüger; Andreas Tauch; Alexander Goesmann; Roland Eils; Peer Bork; Oliver Kohlbacher; Ursula Kummer; Rolf Backofen; et al. (CoRDI, 2023)

Base4NFDI - Basic Services for NFDI Creating NFDI-Wide Basic Services in a World of Specific Domains. - Sonja Schimmler; Reinhard Altenhöner; Lars Bernard; Juliane Fluck; Axel Klinger; Sören Lorenz; Brigitte Mathiak; Bernhard Miller; Raphael Ritz; Thomas Schörner-Sadenius; Alexander Sczyrba; Regine Stein (CoRDI, 2023)

subMG automates data submission for metagenomics studies. - Tom Tubbesing; Andreas Schlüter; Alexander Sczyrba (BioData Min., 2025)