Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. - Alexander Shlemov; Sergey Bankevich; Andrey V. Bzikadze; Yana Safonova; Pavel A. Pevzner (RECOMB, 2017)

Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. - Theodore Alexandrov; Nina Golyandina; David M. Holloway; Alexander Shlemov; Alexander V. Spirov (J. Comput. Biol., 2018)

PathRacer: Racing Profile HMM Paths on Assembly Graph. - Alexander Shlemov; Anton I. Korobeynikov (AlCoB, 2019)

NPS: scoring and evaluating the statistical significance of peptidic natural product-spectrum matches. - Azat M. Tagirdzhanov; Alexander Shlemov; Alexey A. Gurevich (Bioinform., 2019)

MGnify: the microbiome analysis resource in 2020. - Alex L. Mitchell; Alexandre Almeida; Martin Beracochea; Miguel A. Boland; Josephine Burgin; Guy Cochrane; Michael R. Crusoe; Varsha Kale; Simon C. Potter; Lorna J. Richardson; Ekaterina A. Sakharova; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2020)

Intelligent Identification of Trend Components in Singular Spectrum Analysis. - Nina Golyandina; Pavel Dudnik; Alexander Shlemov (Algorithms, 2023)