Calcium Signals Driven by Single Channel Noise. - Alexander Skupin; Helmut Kettenmann; Martin Falcke (PLoS Comput. Biol., 2010)

Describing the complexity of systems: Multi-variable "set complexity" and hypergraphs - David J. Galas; Nikita A. Sakhanenko; Alexander Skupin; Tomasz M. Ignac (CoRR, 2013)

Automated nuclei clump splitting by combining local concavity orientation and graph partitioning. - Siddharth Samsi; Christophe Trefois; Paul M. A. Antony; Alexander Skupin (BHI, 2014)

Describing the Complexity of Systems: Multivariable "Set Complexity" and the Information Basis of Systems Biology. - David J. Galas; Nikita A. Sakhanenko; Alexander Skupin; Tomasz M. Ignac (J. Comput. Biol., 2014)

Improved Parkinson's Disease Classification from Diffusion MRI Data by Fisher Vector Descriptors. - Luis Salamanca; Nikos Vlassis; Nico Diederich; Florian Bernard; Alexander Skupin (MICCAI (2), 2015)

CaSiAn: a Calcium Signaling Analyzer tool. - Mahsa Moein; Kamil Grzyb; Teresa Gonçalves Martins; Shinya Komoto; Francesca Peri; Alexander D. Crawford; Aymeric Fouquier d'Hérouël; Alexander Skupin (Bioinform., 2018)

PRAQA: Protein Relative Abundance Quantification Algorithm for 3D Fluorescent Images. - Corrado Ameli; Sonja Fixemer; David S. Bouvier; Alexander Skupin (BIOIMAGING, 2021)

A cut finite element method for spatially resolved energy metabolism models in complex neuro-cell morphologies with minimal remeshing. - Sofia Farina; Susanne Claus; Jack S. Hale; Alexander Skupin; Stéphane P. A. Bordas (Adv. Model. Simul. Eng. Sci., 2021)

PaFSe: A Parameter-Free Segmentation Approach for 3D Fluorescent Images. - Corrado Ameli; Sonja Fixemer; David S. Bouvier; Alexander Skupin (SN Comput. Sci., 2022)

Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease. - Sofia Farina; Valérie Voorsluijs; Sonja Fixemer; David S. Bouvier; Susanne Claus; Mark H. Ellisman; Stéphane P. A. Bordas; Alexander Skupin (PLoS Comput. Biol., 2023)

Smoothing unadjusted Langevin algorithms for nonsmooth composite potential functions. - Susan Ghaderi; Masoud Ahookhosh; Adam Arany; Alexander Skupin; Panagiotis Patrinos; Yves Moreau (Appl. Math. Comput., 2024)

Drop-in efficient self-attention approximation method. - Damien François; Mathis Saillot; Jacques Klein; Tegawendé F. Bissyandé; Alexander Skupin (Mach. Learn., 2025)