Gene Networks Description and Modeling in the GeneNet System. - Nikolay A. Kolchanov; Elena A. Ananko; Vitali A. Likhoshvai; Olga A. Podkolodnaya; Elena V. Ignatieva; Alexander V. Ratushny; Yuri G. Matushkin (Gene Regulations and Metabolism, 2002)

GeneNet database: description and modeling of gene networks. - Nikolay A. Kolchanov; Eugenia A. Nedosekina; Elena A. Ananko; Vitali A. Likhoshvai; Nikolay L. Podkolodny; Alexander V. Ratushny; Irina L. Stepanenko; Olga A. Podkolodnaya; Elena V. Ignatieva; Yuri G. Matushkin (Silico Biol., 2002)

GeneNet in 2005. - Elena A. Ananko; Nikolay L. Podkolodny; Irina L. Stepanenko; Olga A. Podkolodnaya; D. A. Rasskazov; Denis S. Miginsky; Vitali A. Likhoshvai; Alexander V. Ratushny; N. N. Podkolodnaya; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

Generalized Hill Function Method for Modeling Molecular Processes. - Vitali A. Likhoshvai; Alexander V. Ratushny (J. Bioinform. Comput. Biol., 2007)

Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. - Elena L. Mishchenko; Kirill D. Bezmaternykh; Vitali A. Likhoshvai; Alexander V. Ratushny; Tamara M. Khlebodarova; Natalia Yu. Sournina; Vladimir A. Ivanisenko; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues. - Alexander V. Ratushny; Ilya Shmulevich; John D. Aitchison (PLoS Comput. Biol., 2011)

Metallochaperones Regulate Intracellular Copper Levels. - Wyming Lee Pang; Amardeep Kaur; Alexander V. Ratushny; Aleksandar Cvetkovic; Sunil Kumar; Min Pan; Adam P. Arkin; John D. Aitchison; Michael W. W. Adams; Nitin S. Baliga (PLoS Comput. Biol., 2013)

Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions. - Samuel A. Danziger; David J. Reiss; Alexander V. Ratushny; Jennifer J. Smith; Christopher L. Plaisier; John D. Aitchison; Nitin S. Baliga (BMC Syst. Biol., 2015)

MAMMOTh: A new database for curated mathematical models of biomolecular systems. - Fedor V. Kazantsev; Ilya R. Akberdin; Sergey A. Lashin; Natalia Ree; Vladimir Timonov; Alexander V. Ratushny; Tamara M. Khlebodarova; Vitali A. Likhoshvai (J. Bioinform. Comput. Biol., 2018)