MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. - Alexander V. Tyakht; Anna S. Popenko; Maxim S. Belenikin; Ilya A. Altukhov; Alexander V. Pavlenko; Elena S. Kostryukova; Oksana V. Selezneva; Andrei K. Larin; Irina Y. Karpova; Dmitry G. Alexeev (Source Code Biol. Medicine, 2012)

Bacterial rose garden for metagenomic SNP-based phylogeny visualization. - Dmitry G. Alexeev; Tanya Bibikova; Boris Kovarsky; Damir Melnikov; Alexander V. Tyakht; Vadim Govorun (BioData Min., 2015)

MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data. - Vladimir Ulyantsev; Sergey Kazakov; Veronika B. Dubinkina; Alexander V. Tyakht; Dmitry G. Alexeev (Bioinform., 2016)

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis. - Veronika B. Dubinkina; Dmitry S. Ischenko; Vladimir Ulyantsev; Alexander V. Tyakht; Dmitry G. Alexeev (BMC Bioinform., 2016)

ResistoMap - online visualization of human gut microbiota antibiotic resistome. - Konstantin S. Yarygin; Boris Kovarsky; Tanya Bibikova; Damir Melnikov; Alexander V. Tyakht; Dmitry G. Alexeev (Bioinform., 2017)

Knomics-Biota - a system for exploratory analysis of human gut microbiota data. - Daria Efimova; Alexander V. Tyakht; Anna S. Popenko; Anatoly N. Vasilyev; Ilya A. Altukhov; Nikita V. Dovidchenko; Vera Odintsova; Natalya Klimenko; Robert Loshkarev; Maria Pashkova; Anna Elizarova; Viktoriya Voroshilova; et al. (BioData Min., 2018)

MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota. - Evgenii I Olekhnovich; Artem T. Vasilyev; Vladimir Ulyantsev; Elena S. Kostryukova; Alexander V. Tyakht (Bioinform., 2018)

VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota. - Oksana E. Glushchenko; Nikita A. Prianichnikov; Evgenii I Olekhnovich; Alexander I Manolov; Alexander V. Tyakht; Elizaveta V. Starikova; Vera Odintsova; Elena S. Kostryukova; Elena Ilina (Bioinform., 2019)

Benchmark of software tools for prokaryotic chromosomal interaction domain identification. - Mikhail D. Magnitov; Veronika S. Kuznetsova; Sergey V. Ulianov; Sergey V. Razin; Alexander V. Tyakht (Bioinform., 2020)

Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments. - Mikhail D. Magnitov; Azat K. Garaev; Alexander V. Tyakht; Sergey V. Ulianov; Sergey V. Razin (BMC Bioinform., 2022)