WinDat: An NMR Database Compilation Tool, User Interface, and Spectrum Libraries for Personal Computers. - Sergei V. Trepalin; Alexander V. Yarkov; Ludmila M. Dolmatova; Nikolai S. Zefirov; Simon A. E. Finch (J. Chem. Inf. Comput. Sci., 1995)

CheD: Chemical Database Compilation Tool, Internet Server, and Client for SQL Servers. - Sergei V. Trepalin; Alexander V. Yarkov (J. Chem. Inf. Comput. Sci., 2001)

Hierarchical Clustering of Large Databases and Classification of Antibiotics at High Noise Levels. - Sergei V. Trepalin; Alexander V. Yarkov (Algorithms, 2008)

Modular Chemical Descriptor Language (MCDL): Stereochemical modules. - Andrei A. Gakh; Michael N. Burnett; Sergei V. Trepalin; Alexander V. Yarkov (J. Cheminformatics, 2011)