Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. - Andrew W. McPherson; Chunxiao Wu; Alexander Wyatt; Sohrab P. Shah; Colin C. Collins; Süleyman Cenk Sahinalp (RECOMB, 2012)

ShatterProof: operational detection and quantification of chromothripsis. - Shaylan K. Govind; Amin Zia; Pablo H. Hennings-Yeomans; John D. Watson; Michael Fraser; Catalina V. Anghel; Alexander Wyatt; Theodorus van der Kwast; Colin C. Collins; John D. McPherson; Robert G. Bristow; Paul C. Boutros (BMC Bioinform., 2014)

SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA. - Can Kockan; Faraz Hach; Iman Sarrafi; Robert H. Bell; Brian McConeghy; Kevin Beja; Anne Haegert; Alexander W. Wyatt; Stanislav Volik; Kim N. Chi; Colin C. Collins; Süleyman Cenk Sahinalp (Bioinform., 2017)

Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data. - Nilgun Donmez; Salem Malikic; Alexander W. Wyatt; Martin E. Gleave; Colin C. Collins; Süleyman Cenk Sahinalp (J. Comput. Biol., 2017)