FlowGate: towards extensible and scalable web-based flow cytometry data analysis. - Yu Qian; Hyunsoo Kim; Shweta Purawat; Jianwu Wang 001; Rick Stanton; Alexandra Lee; Weijia Xu; Ilkay Altintas; Robert S. Sinkovits; Richard H. Scheuermann (XSEDE, 2015)

Communities Found by Users - not Algorithms: Comparing Human and Algorithmically Generated Communities. - Alexandra Lee; Daniel Archambault (CHI, 2016)

Cell type discovery and representation in the era of high-content single cell phenotyping. - Trygve E. Bakken; Lindsay G. Cowell; Brian D. Aevermann; Mark Novotny; Rebecca D. Hodge; Jeremy A. Miller; Alexandra Lee; Ivan Chang; Jamison M. McCorrison; Bali Pulendran; Yu Qian; Nicholas J. Schork; et al. (BMC Bioinform., 2017)

Influenza Research Database: An integrated bioinformatics resource for influenza virus research. - Yun Zhang 021; Brian D. Aevermann; Tavis K. Anderson; David F. Burke; Gwenaelle Dauphin; Zhiping Gu; Sherry He; Sanjeev Kumar; Christopher N. Larsen; Alexandra J. Lee; Xiaomei Li; Catherine Macken; et al. (Nucleic Acids Res., 2017)

Dynamic Network Plaid: A Tool for the Analysis of Dynamic Networks. - Alexandra Lee; Daniel Archambault; Miguel A. Nacenta (CHI, 2019)

Ten Quick Tips for Deep Learning in Biology. - Benjamin D. Lee; Anthony Gitter; Casey S. Greene; Sebastian Raschka; Finlay Maguire; Alexander J. Titus; Michael D. Kessler; Alexandra J. Lee; Marc G. Chevrette; Paul Allen Stewart; Thiago Britto-Borges; Evan M. Cofer; et al. (CoRR, 2021)

The Effectiveness of Interactive Visualization Techniques for Time Navigation of Dynamic Graphs on Large Displays. - Alexandra Lee; Daniel Archambault; Miguel A. Nacenta (IEEE Trans. Vis. Comput. Graph., 2021)

Ten simple rules for large-scale data processing. - Arkarachai Fungtammasan; Alexandra Lee; Jaclyn N. Taroni; Kurt Wheeler; Chen-Shan Chin; Sean Davis 001; Casey S. Greene (PLoS Comput. Biol., 2022)

Ten quick tips for deep learning in biology. - Benjamin D. Lee; Anthony Gitter; Casey S. Greene; Sebastian Raschka; Finlay Maguire; Alexander J. Titus; Michael D. Kessler; Alexandra J. Lee; Marc G. Chevrette; Paul Allen Stewart; Thiago Britto-Borges; Evan M. Cofer; et al. (PLoS Comput. Biol., 2022)

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses. - Alexandra J. Lee; Dallas L. Mould; Jake Crawford; Dongbo Hu; Rani K. Powers; Georgia Doing; James C. Costello; Deborah A. Hogan; Casey S. Greene (Genom. Proteom. Bioinform., 2022)

Do People Ascribe Similar Emotions to Real and Robotic Dog Tails? - Alexandra Lee; Matthew Studley (TAROS (2), 2024)

The impact of spot-size on single-photon avalanche diode timing-jitter and quantum key distribution. - Alexandra Lee; Alfonso Tello Castillo; Craig Whitehill; Ross Donaldson (IET Quantum Commun., 2024)