The evolution of recombination and genomic structures: a modeling approach. - Alexandra Popa (2011)

RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing. - Alexandra Popa; Kevin Le Brigand; Agnes Paquet; Nicolas Nottet; Karine Robbe-Sermesant; Rainer Waldmann; Pascal Barbry (F1000Research, 2016)

Computer Aided Differential Diagnosis System for Lung Tumor based on Transthoracic Ultrasound image processing and neural networks. - Roxana Rusu-Both; Alexandra Popa; Bianca Toderean; Ovidiu Stan (AQTR, 2020)

A New Approach for Detection and Analysis of Lung Pleural Line Morphology. - Roxana Rusu-Both; Alexandra Popa; Bianca Toderean; Romeo Ioan Chira (AQTR, 2022)

Identifying Cellular Niches in Spatial Transcriptomics: An Investigation into the Capabilities of Large Language Models. - Huanhuan Wei; Xiao Luo 001; Hongyi Yu; Jinping Liang; Luning Yang; Lixing Lin; Alexandra Popa; Xiting Yan (ACL (1), 2025)