Extracting Brain Regions from Rest fMRI with Total-Variation Constrained Dictionary Learning. - Alexandre Abraham; Elvis Dohmatob; Bertrand Thirion; Dimitris Samaras; Gaël Varoquaux (MICCAI (2), 2013)

Region segmentation for sparse decompositions: better brain parcellations from rest fMRI. - Alexandre Abraham; Elvis Dohmatob; Bertrand Thirion; Dimitris Samaras; Gaël Varoquaux (CoRR, 2014)

Machine learning for neuroimaging with scikit-learn. - Alexandre Abraham; Fabian Pedregosa; Michael Eickenberg; Philippe Gervais; Andreas Mueller; Jean Kossaifi; Alexandre Gramfort; Bertrand Thirion; Gaël Varoquaux (Frontiers Neuroinformatics, 2014)

Integrating Multimodal Priors in Predictive Models for the Functional Characterization of Alzheimer's Disease. - Mehdi Rahim; Bertrand Thirion; Alexandre Abraham; Michael Eickenberg; Elvis Dohmatob; Claude Comtat; Gaël Varoquaux (MICCAI (1), 2015)

Learning functional brain atlases modeling inter-subject variability. (Apprentissage d'atlas fonctionnel du cerveau modélisant la variabilité inter-individuelle). - Alexandre Abraham (2015)

Comparing functional connectivity based predictive models across datasets. - Kamalaker Dadi; Alexandre Abraham; Mehdi Rahim; Bertrand Thirion; Gaël Varoquaux (PRNI, 2016)

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example. - Alexandre Abraham; Michael P. Milham; Adriana Di Martino; R. Cameron Craddock; Dimitris Samaras; Bertrand Thirion; Gaël Varoquaux (NeuroImage, 2017)

Predicting brain-age from multimodal imaging data captures cognitive impairment. - Franziskus Liem; Gaël Varoquaux; Jana Kynast; Frauke Beyer; Shahrzad Kharabian Masouleh; Julia M. Huntenburg; Leonie Lampe; Mehdi Rahim; Alexandre Abraham; R. Cameron Craddock; Steffi Riedel-Heller; Tobias Luck; et al. (NeuroImage, 2017)

Offline A/B Testing for Recommender Systems. - Alexandre Gilotte; Clément Calauzènes; Thomas Nedelec; Alexandre Abraham; Simon Dollé (WSDM, 2018)

Benchmarking functional connectome-based predictive models for resting-state fMRI. - Kamalaker Dadi; Mehdi Rahim; Alexandre Abraham; Darya Chyzhyk; Michael P. Milham; Bertrand Thirion; Gaël Varoquaux (NeuroImage, 2019)

Rebuilding Trust in Active Learning with Actionable Metrics. - Alexandre Abraham; Léo Dreyfus-Schmidt (ICDM (Workshops), 2020)

Sample Noise Impact on Active Learning. - Alexandre Abraham; Léo Dreyfus-Schmidt (IAL@PKDD/ECML, 2021)

Identification and validation of Triamcinolone and Gallopamil as treatments for early COVID-19 via an in silico repurposing pipeline. - Méabh MacMahon; Woochang Hwang; Soorin Yim; Eoghan MacMahon; Alexandre Abraham; Justin Barton; Mukunthan Tharmakulasingam; Paul Bilokon; Vasanthi Priyadarshini Gaddi; Namshik Han (CoRR, 2021)

Towards Clear Expectations for Uncertainty Estimation. - Victor Bouvier; Simona Maggio; Alexandre Abraham; Léo Dreyfus-Schmidt (CoRR, 2022)

Cardinal, a metric-based Active learning framework. - Alexandre Abraham; Léo Dreyfus-Schmidt (Softw. Impacts, 2022)

OpenAL: Evaluation and Interpretation of Active Learning Strategies. - William Jonas; Alexandre Abraham; Léo Dreyfus-Schmidt (CoRR, 2023)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2023)

Improving Bias Correction Standards by Quantifying its Effects on Treatment Outcomes. - Alexandre Abraham; Andrés Hoyos Idrobo (CoRR, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2025)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2025)