Segmenting and Tracking Fluorescent Cells in Dynamic 3-D Microscopy With Coupled Active Surfaces. - Alexandre Dufour; V. Shinin; S. Tajbakhsh; N. Guillen-Aghion; Jean-Christophe Olivo-Marin; Christophe Zimmer (IEEE Trans. Image Process., 2005)

3D Mumford-Shah Based Active Mesh. - Alexandre Dufour; Nicole Vincent; Auguste Genovesio (CIARP, 2006)

On the digital trail of mobile cells. - Christophe Zimmer; Bo Zhang 017; Alexandre Dufour; Ayméric Thébaud; Sylvain Berlemont; Vannary Meas-Yedid; Jean-Christophe Olivo-Marin (IEEE Signal Process. Mag., 2006)

3D Automated Nuclear Morphometric Analysis Using Active Meshes. - Alexandre Dufour; JooHyun Lee; Nicole Vincent; Regis Grailhe; Auguste Genovesio (PRIB, 2007)

Segmentation, suivi et visualisation d'objets biologiques en microscopie 3D par fluorescence : Approches par modèles déformables. (Segmentation, tracking and visualization of biological objects in 3D fluorescence microscopy using deformable models). - Alexandre Dufour (2007)

Tracking live cells in 4D microscopy: From active surfaces to active meshes. - Alexandre Dufour; Jean-Christophe Olivo-Marin (ACSCC, 2008)

Automated quantification of cell endocytosis using active contours and wavelets. - Alexandre Dufour; Vannary Meas-Yedid; Alexandre Grassart; Jean-Christophe Olivo-Marin (ICPR, 2008)

Tracking articulated objects with physics engines. - Fabrice de Chaumont; Alexandre Dufour; Jean-Christophe Olivo-Marin (ICIP, 2009)

Using Physics Engines to Track Objects in Images. - Fabrice de Chaumont; Alexandre Dufour; Pierre Serreau; Johnathan Chabout; Sylvia Münter; Friedrich Frischknecht; Sylvie Granon; Jean-Christophe Olivo-Marin (ISBI, 2009)

Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences. - Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (EMBC, 2011)

Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy. - Sorin Pop; Alexandre Dufour; Jean-Christophe Olivo-Marin (ICIP, 2011)

A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy. - Sorin Pop; Alexandre Dufour; Jean-Francois Le Garrec; Chiara V. Ragni; Margaret E. Buckingham; Sigolene M. Meilhac; Jean-Christophe Olivo-Marin (ISBI, 2011)

3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy. - Alexandre Dufour; Roman Thibeaux; Elisabeth Labruyere; Nancy Guillen; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2011)

Fluid optical flow for forces and pressure field estimation in cellular biology. - Timothee Lecomte; Roman Thibeaux; Nancy Guillen; Alexandre Dufour; Jean-Christophe Olivo-Marin (ICIP, 2012)

Characterization of cell shape and deformation in 3D using Spherical Harmonics. - Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (ISBI, 2012)

Icy: A user-friendly environment for algorithm development and deployment. - Fabrice de Chaumont; Stephane Dallongeville; Thomas Provoost; Timothee Lecomte; Alexandre Dufour; Jean-Christophe Olivo-Marin (EUSIPCO, 2013)

Automatic detection of 3D cell protrusions using spherical wavelets. - Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (ICIP, 2013)

Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart. - Sorin Pop; Alexandre Dufour; Jean-Francois Le Garrec; Chiara V. Ragni; Clémire Cimper; Sigolene M. Meilhac; Jean-Christophe Olivo-Marin (Bioinform., 2013)

Fluid dynamics modeling of cell and membrane deformations. - Costanza Simoncini; Timothee Lecomte; Roman Thibeaux; Nancy Guillen; Alexandre Dufour; Jean-Christophe Olivo-Marin (ISBI, 2014)

3D shape analysis using overcomplete spherical wavelets: Application to BLEB detection in cell biology. - Robin Tournemenne; Christel Ducroz; Jean-Christophe Olivo-Marin; Alexandre Dufour (ISBI, 2014)

Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye. - Alexandre Cecilien Dufour; Tzu-Yu Liu; Christel Ducroz; Robin Tournemenne; Beryl Cummings; Roman Thibeaux; Nancy Guillen; Alfred O. Hero III; Jean-Christophe Olivo-Marin (IEEE Signal Process. Mag., 2015)

Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow. - Aleix Boquet-Pujadas; Maria Manich; Nancy Guillen; Jean-Christophe Olivo-Marin; Alexandre Cecilien Dufour (ISBI, 2016)

Quad-edge active contours for biomedical image segmentation. - Daniel F. Gonzalez Obando; Lauriane Rohfritsch; Manon Faure; Lydia Danglot; Vannary Meas-Yedid; Jean-Christophe Olivo-Marin; Alexandre Cecilien Dufour (ISBI, 2017)