Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties. - Alexandre G. de Brevern; Serge A. Hazout (SPIRE, 2000)

Genome Compartimentation by a Hybrid Chromosome Model (HM). Application to Saccharomyces Cerevisae Subtelomeres. - Alexandre G. de Brevern; France Loirat; Anne Badel-Chagnon; Cécile André; Pierre Vincens; Serge A. Hazout (Comput. Chem., 2002)

Hybrid protein model (HPM): a method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training. - Cristina Benros; Alexandre G. de Brevern; Serge A. Hazout (NNSP, 2003)

'Hybrid Protein Model' for optimally defining 3D protein structure fragments. - Alexandre G. de Brevern; Serge A. Hazout (Bioinform., 2003)

Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering. - Alexandre G. de Brevern; Serge A. Hazout; Alain Malpertuy (BMC Bioinform., 2004)

Use of a structural alphabet for analysis of short loops connecting repetitive structures. - Laurent Fourrier; Cristina Benros; Alexandre G. de Brevern (BMC Bioinform., 2004)

Local backbone structure prediction of proteins. - Alexandre G. de Brevern; Cristina Benros; Romain Gautier; Hélène Valadié; Serge A. Hazout; Catherine Etchebest (Silico Biol., 2004)

New assessment of a structural alphabet. - Alexandre G. de Brevern (Silico Biol., 2005)

'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments. - Jean-Christophe Gelly; Alexandre G. de Brevern; Serge A. Hazout (Bioinform., 2006)

Protein Peeling 2: a web server to convert protein structures into series of protein units. - Jean-Christophe Gelly; Catherine Etchebest; Serge A. Hazout; Alexandre G. de Brevern (Nucleic Acids Res., 2006)

Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. - Manoj Tyagi; P. Sharma; C. S. Swamy; F. Cadet; Narayanaswamy Srinivasan; Alexandre G. de Brevern; Bernard O. Offmann (Nucleic Acids Res., 2006)

Protein short loop prediction in terms of a structural alphabet. - Manoj Tyagi; Aurélie Bornot; Bernard O. Offmann; Alexandre G. de Brevern (Comput. Biol. Chem., 2009)

Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site. - Ksenia Oguievetskaia; Laetitia Martin-Chanas; Artem Vorotyntsev; Olivia Doppelt-Azeroual; Xavier Brotel; Stewart A. Adcock; Alexandre G. de Brevern; François Delfaud; Fabrice Moriaud (J. Comput. Aided Mol. Des., 2009)

Computational fragment-based drug design to explore the hydrophobic subpocket of the mitotic kinesin Eg5 allosteric binding site. - Ksenia Oguievetskaia; Laetitia Martin-Chanas; Artem Vorotyntsev; Olivia Doppelt-Azeroual; Xavier Brotel; Stewart A. Adcock; Alexandre G. de Brevern; François Delfaud; Fabrice Moriaud (J. Cheminformatics, 2010)

A Novel Evaluation of Residue and Protein Volumes by Means of Laguerre Tessellation. - Jeremy Esque; Christophe Oguey; Alexandre G. de Brevern (J. Chem. Inf. Model., 2010)

Protein Peeling 3D: new tools for analyzing protein structures. - Jean-Christophe Gelly; Alexandre G. de Brevern (Bioinform., 2011)

Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts. - Jeremy Esque; Christophe Oguey; Alexandre G. de Brevern (J. Chem. Inf. Model., 2011)

iPBA: a tool for protein structure comparison using sequence alignment strategies. - Jean-Christophe Gelly; Agnel Praveen Joseph; Narayanaswamy Srinivasan; Alexandre G. de Brevern (Nucleic Acids Res., 2011)

PredyFlexy: flexibility and local structure prediction from sequence. - Alexandre G. de Brevern; Aurélie Bornot; Pierrick Craveur; Catherine Etchebest; Jean-Christophe Gelly (Nucleic Acids Res., 2012)

DoSA: Database of Structural Alignments. - Swapnil Mahajan; Garima Agarwal; Mohammed Iftekhar; Bernard O. Offmann; Alexandre G. de Brevern; Narayanaswamy Srinivasan (Database J. Biol. Databases Curation, 2013)

VLDP web server: a powerful geometric tool for analysing protein structures in their environment. - Jeremy Esque; Sylvain Léonard; Alexandre G. de Brevern; Christophe Oguey (Nucleic Acids Res., 2013)

PolyprOnline: polyproline helix II and secondary structure assignment database. - Romain Chebrek; Sylvain Léonard; Alexandre G. de Brevern; Jean-Christophe Gelly (Database J. Biol. Databases Curation, 2014)

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins. - Pierrick Craveur; Joseph Rebehmed; Alexandre G. de Brevern (Database J. Biol. Databases Curation, 2014)

Improving protein fold recognition with hybrid profiles combining sequence and structure evolution. - Yassine Ghouzam; Guillaume Postic; Alexandre G. de Brevern; Jean-Christophe Gelly (Bioinform., 2015)

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. - Sneha Vishwanath; Alexandre G. de Brevern; Narayanaswamy Srinivasan (PLoS Comput. Biol., 2018)

PEPOP 2.0: new approaches to mimic non-continuous epitopes. - Vincent Demolombe; Alexandre G. de Brevern; Liza Figueredo Felicori; Christophe Nguyen; Ricardo Andrez Machado de Avila; Lionel Valera; Bénédicte Jardin-Watelet; Géraldine Lavigne; Aurélien Lebreton; Franck Molina; Violaine Moreau (BMC Bioinform., 2019)

Benchmarking the PEPOP methods for mimicking discontinuous epitopes. - Vincent Demolombe; Alexandre G. de Brevern; Franck Molina; Géraldine Lavigne; Claude Granier; Violaine Moreau (BMC Bioinform., 2019)

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach. - Guilhem Faure; Agnel Praveen Joseph; Pierrick Craveur; Tarun J. Narwani; Narayanaswamy Srinivasan; Jean-Christophe Gelly; Joseph Rebehmed; Alexandre G. de Brevern (Source Code Biol. Medicine, 2019)

SWORD2: hierarchical analysis of protein 3D structures. - Gabriel Cretin; Tatiana Galochkina; Yann Vander Meersche; Alexandre G. de Brevern; Guillaume Postic; Jean-Christophe Gelly (Nucleic Acids Res., 2022)

Shaking the β-Bulges. - Pierrick Craveur; Tarun J. Narwani; Narayanaswamy Srinivasan; Jean-Christophe Gelly; Joseph Rebehmed; Alexandre G. de Brevern (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)