Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Oscar Dias (PACBB, 2021)

A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli. - Alexandre Oliveira; Joana Rodrigues; Eugénio Campos Ferreira; Lígia R. Rodrigues; Oscar Dias (PLoS Comput. Biol., 2021)

Exploring Xylella fastidiosa's Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium. - Alexandre Oliveira; Emanuel Cunha; Miguel Silva; Cristiana Faria; Oscar Dias (PACBB, 2022)

Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Cláudia Sampaio; Oscar Dias (J. Integr. Bioinform., 2022)

Evolutionary Algorithms for Metabolic Transformation through Multi-gene Knockout Optimization. - Bruno Sá; Alexandre Oliveira; Miguel Rocha 001 (GECCO, 2025)

OrbitZoo: Multi-Agent Reinforcement Learning Environment for Orbital Dynamics. - Alexandre Oliveira; Katarina Dyreby; Francisco M. Caldas; Cláudia Soares (CoRR, 2025)

FAuNO: Semi-Asynchronous Federated Reinforcement Learning Framework for Task Offloading in Edge Systems. - Frederico Metelo; Alexandre Oliveira; Stevo Rackovic; Pedro Ákos Costa; Cláudia Soares (CoRR, 2025)