Improving Efficiency of Data Assimilation Procedure for a Biomechanical Heart Model by Representing Surfaces as Currents. - Alexandre Imperiale; Alexandre Routier; Stanley Durrleman; Philippe Moireau (FIMH, 2013)

Joint Morphometry of Fiber Tracts and Gray Matter Structures Using Double Diffeomorphisms. - Pietro Gori; Olivier Colliot; Linda Marrakchi-Kacem; Yulia Worbe; Alexandre Routier; Cyril Poupon; Andreas Hartmann; Nicholas Ayache; Stanley Durrleman (IPMI, 2015)

A Mixed-Effects Model with Time Reparametrization for Longitudinal Univariate Manifold-Valued Data. - Jean-Baptiste Schiratti; Stéphanie Allassonnière; Alexandre Routier; Olivier Colliot; Stanley Durrleman (IPMI, 2015)

Spatio-Temporal Shape Analysis of Cross-Sectional Data for Detection of Early Changes in Neurodegenerative Disease. - Claire Cury; Marco Lorenzi; David M. Cash; Jennifer M. Nicholas; Alexandre Routier; Jonathan D. Rohrer; Sébastien Ourselin; Stanley Durrleman; Marc Modat (SeSAMI@MICCAI, 2016)

Prediction of the Progression of Subcortical Brain Structures in Alzheimer's Disease from Baseline. - Alexandre Bône; Maxime Louis; Alexandre Routier; Jorge Samper-González; Michael Bacci; Benjamin Charlier; Olivier Colliot; Stanley Durrleman (GRAIL/MFCA/MICGen@MICCAI, 2017)

Statistical Learning of Spatiotemporal Patterns from Longitudinal Manifold-Valued Networks. - Igor Koval; Jean-Baptiste Schiratti; Alexandre Routier; Michael Bacci; Olivier Colliot; Stéphanie Allassonnière; Stanley Durrleman (MICCAI (1), 2017)

Reproducible evaluation of classification methods in Alzheimer's disease: framework and application to MRI and PET data. - Jorge Samper-González; Ninon Burgos; Simona Bottani; Sabrina Fontanella; Pascal Lu; Arnaud Marcoux; Alexandre Routier; Jérémy Guillon; Michael Bacci; Junhao Wen 002; Anne Bertrand; Hugo Bertin; et al. (CoRR, 2018)

Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimers disease. - Junhao Wen 002; Jorge Samper-González; Simona Bottani; Alexandre Routier; Ninon Burgos; Thomas Jacquemont; Sabrina Fontanella; Stanley Durrleman; Stéphane Epelbaum; Anne Bertrand; Olivier Colliot (CoRR, 2018)

An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. - Arnaud Marcoux; Ninon Burgos; Anne Bertrand; Marc Teichmann; Alexandre Routier; Junhao Wen 002; Jorge Samper-González; Simona Bottani; Stanley Durrleman; Marie Odile Habert; Olivier Colliot (Frontiers Neuroinformatics, 2018)

Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data. - Jorge Samper-González; Ninon Burgos; Simona Bottani; Sabrina Fontanella; Pascal Lu; Arnaud Marcoux; Alexandre Routier; Jérémy Guillon; Michael Bacci; Junhao Wen 002; Anne Bertrand; Hugo Bertin; et al. (NeuroImage, 2018)

Double Diffeomorphism: Combining Morphometry and Structural Connectivity Analysis. - Pietro Gori; Olivier Colliot; Linda Marrakchi-Kacem; Yulia Worbe; Alexandre Routier; Cyril Poupon; Andreas Hartmann; Nicholas Ayache; Stanley Durrleman (IEEE Trans. Medical Imaging, 2018)

Imagerie cérébrale multimodale pour l'étude des aphasies primaires progressives. (Multimodal brain imaging for the study of progressive primary aphasia). - Alexandre Routier (2018)

Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation. - Junhao Wen 002; Elina Thibeau-Sutre; Jorge Samper-González; Alexandre Routier; Simona Bottani; Stanley Durrleman; Ninon Burgos; Olivier Colliot (CoRR, 2019)

The White Matter Module-Hub Network of Semantics Revealed by Semantic Dementia. - Martina Sundqvist; Alexandre Routier; Bruno Dubois; Olivier Colliot; Marc Teichmann (J. Cogn. Neurosci., 2020)

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation. - Junhao Wen 002; Elina Thibeau-Sutre; Mauricio Diaz-Melo; Jorge Samper-González; Alexandre Routier; Simona Bottani; Didier Dormont; Stanley Durrleman; Ninon Burgos; Olivier Colliot (Medical Image Anal., 2020)

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies. - Alexandre Routier; Ninon Burgos; Mauricio Diaz-Melo; Michael Bacci; Simona Bottani; Omar El-Rifai; Sabrina Fontanella; Pietro Gori; Jérémy Guillon; Alexis Guyot; Ravi Hassanaly; Thomas Jacquemont; et al. (Frontiers Neuroinformatics, 2021)

Reproducible Evaluation of Diffusion MRI Features for Automatic Classification of Patients with Alzheimer's Disease. - Junhao Wen 002; Jorge Samper-González; Simona Bottani; Alexandre Routier; Ninon Burgos; Thomas Jacquemont; Sabrina Fontanella; Stanley Durrleman; Stéphane Epelbaum; Anne Bertrand; Olivier Colliot (Neuroinformatics, 2021)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

ClinicaDL: An open-source deep learning software for reproducible neuroimaging processing. - Elina Thibeau-Sutre; Mauricio Diaz-Melo; Ravi Hassanaly; Alexandre Routier; Didier Dormont; Olivier Colliot; Ninon Burgos (Comput. Methods Programs Biomed., 2022)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

Ensembling Voxel-Based and Box-Based Model Predictions for Robust Lesion Detection. - Noëlie Debs; Alexandre Routier; Clément Abi Nader; Arnaud Marcoux; Alexandre Bône; Marc-Michel Rohé (AMAI@MICCAI, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)