Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. - Barrett C. Foat; Alexandre V. Morozov; Harmen J. Bussemaker (ISMB (Supplement of Bioinformatics), 2006)

Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease. - Omar Haq; Ronald M. Levy; Alexandre V. Morozov; Michael Andrec (BMC Bioinform., 2009)

Decoding Complex Chemical Mixtures with a Physical Model of a Sensor Array. - Julia Tsitron; Addison D. Ault; James R. Broach; Alexandre V. Morozov (PLoS Comput. Biol., 2011)

Correlated Electrostatic Mutations Provide a Reservoir of Stability in HIV Protease. - Omar Haq; Michael Andrec; Alexandre V. Morozov; Ronald M. Levy (PLoS Comput. Biol., 2012)

Biophysical Fitness Landscapes for Transcription Factor Binding Sites. - Allan Haldane; Michael Manhart; Alexandre V. Morozov (PLoS Comput. Biol., 2014)

Rapid Bayesian Inference of Global Network Statistics using Random Walks. - Willow B. Kion-Crosby; Alexandre V. Morozov (CoRR, 2017)

RefCell: multi-dimensional analysis of image-based high-throughput screens based on 'typical cells'. - Yang Shen; Nard Kubben; Julián Candia; Alexandre V. Morozov; Tom Misteli; Wolfgang Losert (BMC Bioinform., 2018)