Custos: Security Middleware for Science Gateways. - Isuru Ranawaka; Suresh Marru; Juleen Graham; Aarushi Bisht; Jim Basney; Terry Fleury; Jeff Gaynor; Dimuthu Wannipurage; Marcus Christie; Alexandru Mahmoud; Enis Afgan; Marlon E. Pierce (PEARC, 2020)

GalaxyCloudRunner: enhancing scalable computing for Galaxy. - Nuwan Goonasekera; Alexandru Mahmoud; John Chilton; Enis Afgan (Bioinform., 2021)

Experiences with Integrating Custos SecurityServices. - Isuru Ranawaka; Samitha Liyanage; Dannon Baker; Alexandru Mahmoud; Juleen Graham; Terry Fleury; Dimuthu Wannipurage; Yu Ma; Enis Afgan; Jim Basney; Suresh Marru; Marlon E. Pierce (CoRR, 2021)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

Galaxy Helm chart: a standardized method for deploying production Galaxy servers. - Nuwan Goonasekera; Alexandru Mahmoud; Keith Suderman; Enis Afgan (Bioinform., 2024)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean Davis 001; Maria A. Doyle; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; Kozo Nishida; Marcel Ramos; et al. (CoRR, 2024)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean R. Davis; Maria A. Doyle; Ludwig Geistlinger; Andrew R. Ghazi; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; et al. (PLoS Comput. Biol., 2025)