SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. - Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A. Gurevich; Mikhail Dvorkin; Alexander S. Kulikov; Valery M. Lesin; Sergey I. Nikolenko; Son K. Pham; Andrey D. Prjibelski; Alex Pyshkin; Alexander Sirotkin 001; et al. (J. Comput. Biol., 2012)

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. - Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A. Gurevich; Anton I. Korobeynikov; Alla L. Lapidus; Andrey D. Prjibelsky; Alex Pyshkin; Alexander Sirotkin 001; Yakov Sirotkin; Ramunas Stepanauskas; Jeffrey S. McLean; et al. (RECOMB, 2013)

QUAST: quality assessment tool for genome assemblies. - Alexey A. Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler (Bioinform., 2013)

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. - Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A. Gurevich; Anton I. Korobeynikov; Alla L. Lapidus; Andrey D. Prjibelski; Alex Pyshkin; Alexander Sirotkin 001; Yakov Sirotkin; Ramunas Stepanauskas; Scott R. Clingenpeel; et al. (J. Comput. Biol., 2013)

ExSPAnder: a universal repeat resolver for DNA fragment assembly. - Andrey D. Prjibelski; Irina Vasilinetc; Anton Bankevich; Alexey A. Gurevich; Tatiana Krivosheeva; Sergey Nurk; Son K. Pham; Anton I. Korobeynikov; Alla L. Lapidus; Pavel A. Pevzner (Bioinform., 2014)

Assembling short reads from jumping libraries with large insert sizes. - Irina Vasilinetc; Andrey D. Prjibelski; Alexey A. Gurevich; Anton I. Korobeynikov; Pavel A. Pevzner (Bioinform., 2015)

MetaQUAST: evaluation of metagenome assemblies. - Alla Mikheenko; Vladislav Saveliev; Alexey A. Gurevich (Bioinform., 2016)

Icarus: visualizer for de novo assembly evaluation. - Alla Mikheenko; Gleb Valin; Andrey D. Prjibelski; Vladislav Saveliev; Alexey A. Gurevich (Bioinform., 2016)

Versatile genome assembly evaluation with QUAST-LG. - Alla Mikheenko; Andrey D. Prjibelski; Vladislav Saveliev; Dmitry Antipov; Alexey A. Gurevich (Bioinform., 2018)

De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. - Bahar Behsaz; Hosein Mohimani; Alexey A. Gurevich; Andrey D. Prjibelski; Mark F. Fisher; Larry Smarr; Pieter C. Dorrestein; Joshua S. Mylne; Pavel A. Pevzner (RECOMB, 2019)

NPS: scoring and evaluating the statistical significance of peptidic natural product-spectrum matches. - Azat M. Tagirdzhanov; Alexander Shlemov; Alexey A. Gurevich (Bioinform., 2019)

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. - Alla Mikheenko; Andrey V. Bzikadze; Alexey A. Gurevich; Karen H. Miga; Pavel A. Pevzner (Bioinform., 2020)

WebQUAST: online evaluation of genome assemblies. - Alla Mikheenko; Vladislav Saveliev; Pascal Hirsch; Alexey A. Gurevich (Nucleic Acids Res., 2023)