PASS: prediction of activity spectra for biologically active substances. - Alexey Lagunin; Alla Stepanchikova; Dmitrii Filimonov; Vladimir Poroikov (Bioinform., 2000)

Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds. - Vladimir Poroikov; Dmitrii Filimonov; Yulia V. Borodina; A. A. Lagunin; A. Kos (J. Chem. Inf. Comput. Sci., 2000)

PASS Biological Activity Spectrum Predictions in the Enhanced Open NCI Database Browser. - Vladimir Poroikov; Dmitrii Filimonov; Wolf-Dietrich Ihlenfeldt; Tatyana Gloriozova; Alexey Lagunin; Yulia V. Borodina; Alla Stepanchikova; Marc C. Nicklaus (J. Chem. Inf. Comput. Sci., 2003)

CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. - Fedor A. Kolpakov; Vladimir Poroikov; Ruslan N. Sharipov; Yury V. Kondrakhin; Alexey V. Zakharov; Alexey Lagunin; Luciano Milanesi; Alexander E. Kel (Nucleic Acids Res., 2007)

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates. - Boris Sobolev; Dmitry Filimonov; Alexey Lagunin; Alexey V. Zakharov; Olga Koborova; Alexander E. Kel; Vladimir Poroikov (BMC Bioinform., 2010)

Collaborative development of predictive toxicology applications. - Barry J. Hardy; Nicki Douglas; Christoph Helma; Micha Rautenberg; Nina Jeliazkova; Vedrin Jeliazkov; Ivelina Nikolova; Romualdo Benigni; Olga Tcheremenskaia; Stefan Kramer 001; Tobias Girschick; Fabian Buchwald; et al. (J. Cheminformatics, 2010)

OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia. - Olga Tcheremenskaia; Romualdo Benigni; Ivelina Nikolova; Nina Jeliazkova; Sylvia Escher; Monika Batke; Thomas Baier 005; Vladimir Poroikov; Alexey Lagunin; Micha Rautenberg; Barry J. Hardy (J. Biomed. Semant., 2012)

DIGEP-Pred: web service for in silico prediction of drug-induced gene expression profiles based on structural formula. - Alexey Lagunin; Sergey Ivanov; Anastasia V. Rudik; Dmitry Filimonov; Vladimir Poroikov (Bioinform., 2013)

Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm. - Anastasia V. Rudik; Alexander V. Dmitriev; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (J. Chem. Inf. Model., 2014)

SOMP: web server for in silico prediction of sites of metabolism for drug-like compounds. - Anastasia V. Rudik; Alexander V. Dmitriev; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (Bioinform., 2015)

Prediction of reacting atoms for the major biotransformation reactions of organic xenobiotics. - Anastasia V. Rudik; Alexander V. Dmitriev; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (J. Cheminformatics, 2016)

MetaTox: Web Application for Predicting Structure and Toxicity of Xenobiotics' Metabolites. - Anastasia V. Rudik; Vladislav M. Bezhentsev; Alexander V. Dmitriev; Dmitry S. Druzhilovskiy; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (J. Chem. Inf. Model., 2017)

ROSC-Pred: web-service for rodent organ-specific carcinogenicity prediction. - Alexey Lagunin; Anastasia V. Rudik; Dmitry S. Druzhilovskiy; Dmitry Filimonov; Vladimir Poroikov (Bioinform., 2018)

ADVERPred-Web Service for Prediction of Adverse Effects of Drugs. - Sergey Ivanov; Alexey Lagunin; Anastasia V. Rudik; Dmitry Filimonov; Vladimir Poroikov (J. Chem. Inf. Model., 2018)

Glycogen synthase kinase-3 inhibition as a potential pharmacological target for vascular dementia: In silico and in vivo evidence. - Sandeep Kumar; Sergey Ivanov; Alexey Lagunin; Rajesh Kumar Goel (Comput. Biol. Medicine, 2019)

Metatox - Web application for generation of metabolic pathways and toxicity estimation. - Anastasiya V. Rudik; Vladislav M. Bezhentsev; Alexander V. Dmitriev; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (J. Bioinform. Comput. Biol., 2019)

Rational Use of Heterogeneous Data in Quantitative Structure-Activity Relationship (QSAR) Modeling of Cyclooxygenase/Lipoxygenase Inhibitors. - Alexey Lagunin; Athina Geronikaki; Phaedra Eleftheriou; Pavel V. Pogodin; Alexey V. Zakharov (J. Chem. Inf. Model., 2019)

AntiBac-Pred: A Web Application for Predicting Antibacterial Activity of Chemical Compounds. - Pavel V. Pogodin; Alexey Lagunin; Anastasia V. Rudik; Dmitry S. Druzhilovskiy; Dmitry Filimonov; Vladimir Poroikov (J. Chem. Inf. Model., 2019)

Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions. - Sergey Ivanov; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (PLoS Comput. Biol., 2019)

The method predicting interaction between protein targets and small-molecular ligands with the wide applicability domain. - Dmitry A. Karasev; Boris Sobolev; Alexey Lagunin; Dmitry Filimonov; Vladimir Poroikov (Comput. Biol. Chem., 2022)

Bioinformatics guided rotenone adjuvant kindling in mice as a new animal model of drug-resistant epilepsy. - Sandeep Kumar; Sergey Ivanov; Alexey Lagunin; Rajesh Kumar Goel (Comput. Biol. Medicine, 2022)

Prediction of pathogenic single amino acid substitutions using molecular fragment descriptors. - Anton Zadorozhny; Anton Smirnov; Dmitry Filimonov; Alexey Lagunin (Bioinform., 2023)

Prediction of viral protease inhibitors using proteochemometrics approach. - Dmitry A. Karasev; Boris Sobolev; Dmitrii Filimonov; Alexey Lagunin (Comput. Biol. Chem., 2024)