Efficient Computation of the Phylogenetic Likelihood Function on the Intel MIC Architecture. - Alexey M. Kozlov; Christian Goll; Alexandros Stamatakis (IPDPS Workshops, 2014)

ExaML version 3: a tool for phylogenomic analyses on supercomputers. - Alexey M. Kozlov; Andre J. Aberer; Alexandros Stamatakis (Bioinform., 2015)

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. - Alexey M. Kozlov; Diego Darriba; Tomás Flouri; Benoit Morel; Alexandros Stamatakis (Bioinform., 2019)

ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes. - Benoit Morel; Alexey M. Kozlov; Alexandros Stamatakis (Bioinform., 2019)

12 Grand Challenges in Single-Cell Data Science. - David Laehnemann; Johannes Köster; Ewa Szczurek; Davis J. McCarthy; Stephanie C. Hicks; Mark D. Robinson; Catalina A. Vallejos; Niko Beerenwinkel; Kieran R. Campbell; Ahmed Mahfouz; Luca Pinello; Pavel Skums; et al. (PeerJ Prepr., 2019)

A fast and memory-efficient implementation of the transfer bootstrap. - Sarah Lutteropp; Alexey M. Kozlov; Alexandros Stamatakis (Bioinform., 2020)

Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG. - Lukas Hübner; Alexey M. Kozlov; Demian Hespe; Peter Sanders 001; Alexandros Stamatakis (Bioinform., 2021)

NetRAX: accurate and fast maximum likelihood phylogenetic network inference. - Sarah Lutteropp; Céline Scornavacca; Alexey M. Kozlov; Benoit Morel; Alexandros Stamatakis (Bioinform., 2022)