Exploiting gene interaction information from microarray expression data for cancer classification. - Alexey V. Antonov; Igor V. Tetko; Michael T. Mader; Jan Budczies; Hans-Werner Mewes (German Conference on Bioinformatics, 2003)

Optimization models for cancer classification: extracting gene interaction information from microarray expression data. - Alexey V. Antonov; Igor V. Tetko; Michael T. Mader; Jan Budczies; Hans-Werner Mewes (Bioinform., 2004)

A web portal for classification of expression data using maximal margin linear programming. - Alexey V. Antonov; Igor V. Tetko; Volodymyr V. Prokopenko; Denis Kosykh; Hans-Werner Mewes (Bioinform., 2004)

MIPS bacterial genomes functional annotation benchmark dataset. - Igor V. Tetko; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Gisela Fobo; Andreas Ruepp; Alexey V. Antonov; Dimitrij Surmeli; Hans-Werner Mewes (Bioinform., 2005)

Exploiting scale-free information from expression data for cancer classification. - Alexey V. Antonov; Igor V. Tetko; Denis Kosykh; Dimitrij Surmeli; Hans-Werner Mewes (Comput. Biol. Chem., 2005)

Benchmarking of Linear and Nonlinear Approaches for Quantitative Structure-Property Relationship Studies of Metal Complexation with Ionophores. - Igor V. Tetko; Vitaly P. Solov'ev; Alexey V. Antonov; Xiaojun Yao; Jean-Pierre Doucet; Bo Tao Fan; Frank Hoonakker; Denis Fourches; Piere Jost; Nicolas Lachiche; Alexandre Varnek (J. Chem. Inf. Model., 2006)

Revealing Comprehensive Genotype-Phenotype Associations through Logic Relationships. - Alexey V. Antonov; Hans-Werner Mewes (German Conference on Bioinformatics, 2007)

Consecutive KEGG Pathway Models for the Interpretation of High-throughput Genomics Data. - Alexey V. Antonov; Sabine Dietmann; Hans-Werner Mewes (German Conference on Bioinformatics, 2008)

Complex phylogenetic profiling reveals fundamental genotype-phenotype associations. - Alexey V. Antonov; Hans-Werner Mewes (Comput. Biol. Chem., 2008)

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. - Alexey V. Antonov; Thorsten Schmidt; Yu Wang 008; Hans-Werner Mewes (Nucleic Acids Res., 2008)

The DICS repository: module-assisted analysis of disease-related gene lists. - Sabine Dietmann; Elisabeth Georgii; Alexey V. Antonov; Koji Tsuda; Hans-Werner Mewes (Bioinform., 2009)

GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. - Alexey V. Antonov; Sabine Dietmann; Philip Wong; Dominik Lutter; Hans-Werner Mewes (Nucleic Acids Res., 2009)

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases. - Alexey V. Antonov; Esther Schmidt; Sabine Dietmann; Maria Krestyaninova; Henning Hermjakob (Nucleic Acids Res., 2010)

CCancer: a bird's eye view on gene lists reported in cancer-related studies. - Sabine Dietmann; Wanseon Lee; Philip Wong; Igor V. Rodchenkov; Alexey V. Antonov (Nucleic Acids Res., 2010)

BioProfiling.de: analytical web portal for high-throughput cell biology. - Alexey V. Antonov (Nucleic Acids Res., 2011)

MIPS: curated databases and comprehensive secondary data resources in 2010. - Hans-Werner Mewes; Andreas Ruepp; Fabian J. Theis; Thomas Rattei; Mathias C. Walter; Dmitrij Frishman; Karsten Suhre; Manuel Spannagl; Klaus F. X. Mayer; Volker Stümpflen; Alexey V. Antonov (Nucleic Acids Res., 2011)