Comparative Analysis of the Secondary Structure of mRNA Encoded by High- and Low-Expression Eukaryotic Genes. - I. V. Ischenko; Alexey V. Kochetov; Alexander E. Kel; Nikolay A. Kolchanov; L. L. Kisselev (German Conference on Bioinformatics, 1996)

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Alexander E. Kel; Yury V. Kondrakhin; Anatoly S. Frolov; Fedor A. Kolpakov; T. N. Goryachkovskaya; O. V. Kel; Elena A. Ananko; Elena V. Ignatieva; Olga A. Podkolodnaya; Vladimir N. Babenko; et al. (ISMB, 1998)

Prediction of eukaryotic mRNA translational properties. - Alexey V. Kochetov; Mikhail P. Ponomarenko; Anatoly S. Frolov; L. L. Kisselev; Nikolay A. Kolchanov (Bioinform., 1999)

Integrated databases and computer systems for studying eukaryotic gene expression. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Anatoly S. Frolov; Elena A. Ananko; Fedor A. Kolpakov; Elena V. Ignatieva; Olga A. Podkolodnaya; T. N. Goryachkovskaya; Irina L. Stepanenko; Tatyana I. Merkulova; V. V. Babenko; Y. V. Ponomarenko; et al. (Bioinform., 1999)

Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon. - Igor B. Rogozin; Alexey V. Kochetov; Fyodor A. Kondrashov; Eugene V. Koonin; Luciano Milanesi (Bioinform., 2001)

Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana. - Alexey V. Kochetov; Akinori Sarai (Bioinform., 2004)

AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context. - Alexey V. Kochetov (Bioinform., 2005)

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. - Alexey V. Kochetov; Andrey Palyanov; Igor I. Titov; Dmitry A. Grigorovich; Akinori Sarai; Nikolay A. Kolchanov (BMC Bioinform., 2007)

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Björn Sommer 001; Evgeny S. Tiys; Benjamin Kormeier; Klaus Hippe; Sebastian Janowski; Timofey V. Ivanisenko; Anatoly O. Bragin; Patrizio Arrigo; Pavel Demenkov; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; et al. (J. Integr. Bioinform., 2010)

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. - Björn Sommer 001; Benjamin Kormeier; Pavel Demenkov; Patrizio Arrigo; Klaus Hippe; Özgür Ates; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; Ralf Hofestädt (J. Bioinform. Comput. Biol., 2013)

PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes. - Canan Has; Sergey A. Lashin; Alexey V. Kochetov; Jens Allmer (J. Integr. Bioinform., 2016)

AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs. - Alexey V. Kochetov; Jens Allmer; Alexandra I. Klimenko; Bulat S. Zuraev; Yury G. Matushkin; Sergey A. Lashin (Bioinform., 2017)