NanoCrystal: A Web-Based Crystallographic Tool for the Construction of Nanoparticles Based on Their Crystal Habit. - Alexios Chatzigoulas; Konstantina Karathanou; Dimitris Dellis; Zoe Cournia (J. Chem. Inf. Model., 2018)

Correction to "NanoCrystal: A Web-Based Crystallographic Tool for the Construction of Nanoparticles Based on Their Crystal Habit". - Alexios Chatzigoulas; Konstantina Karathanou; Dimitris Dellis; Zoe Cournia (J. Chem. Inf. Model., 2019)

FEPrepare: A Web-Based Tool for Automating the Setup of Relative Binding Free Energy Calculations. - Stamatia Zavitsanou; Alexandros Tsengenes; Michail Papadourakis; Giorgio Amendola; Alexios Chatzigoulas; Dimitris Dellis; Sandro Cosconati; Zoe Cournia (J. Chem. Inf. Model., 2021)

Predicting protein-membrane interfaces of peripheral membrane proteins using ensemble machine learning. - Alexios Chatzigoulas; Zoe Cournia (Briefings Bioinform., 2022)

Computational design for drugging protein membrane interfaces - Alexios Chatzigoulas (2022)

DREAMM: a web-based server for drugging protein-membrane interfaces as a novel workflow for targeted drug design. - Alexios Chatzigoulas; Zoe Cournia (Bioinform., 2022)

A Perspective on the Prospective Use of AI in Protein Structure Prediction. - Raphaelle Versini; Sujith Sritharan; Burcu Aykaç Fas; Thibault Tubiana; Sana Zineb Aimeur; Julien Henri; Marie Erard; Oliver Nüsse; Jessica Andreani; Marc Baaden; Patrick Fuchs; Tatiana Galochkina; et al. (J. Chem. Inf. Model., 2024)

Predicting RNA Structure Utilizing Attention from Pretrained Language Models. - Ioannis Papazoglou; Alexios Chatzigoulas; George Tsekenis; Zoe Cournia (J. Chem. Inf. Model., 2025)