Méthodes de distance pour l'inférence phylogénomique. (Distance-based methods for phylogenomics). - Alexis Criscuolo (2006)

Fast NJ-like algorithms to deal with incomplete distance matrices. - Alexis Criscuolo; Olivier Gascuel (BMC Bioinform., 2008)

SUPERTRIPLETS: a triplet-based supertree approach to phylogenomics. - Vincent Ranwez; Alexis Criscuolo; Emmanuel J. P. Douzery (Bioinform., 2010)

ROCK: digital normalization of whole genome sequencing data. - Véronique Legrand; Thomas Kergrohen; Nicolas Joly; Alexis Criscuolo (J. Open Source Softw., 2022)