A flexible algorithm for construction of 3-D vessel networks for use in thermal modeling. - Gerard M. J. van Leeuwen; Alexis N. T. J. Kotte; Jan J. W. Lagendijk (IEEE Trans. Biomed. Eng., 1998)

Segmentation of the Prostate in MR Images by Atlas Matching. - Stefan Klein 001; Uulke A. van der Heide; Bas W. Raaymakers; Alexis N. T. J. Kotte; Marius Staring; Josien P. W. Pluim (ISBI, 2007)

Label Fusion Using Performance Estimation with Iterative Label Selection. - Robin Langerak; Uulke A. van der Heide; Irene Lips; Alexis N. T. J. Kotte; Marco van Vulpen; Josien P. W. Pluim (ISBI, 2009)

Simultaneous multi-modality ROI delineation in clinical practice. - Gijsbert H. Bol; Alexis N. T. J. Kotte; Uulke A. van der Heide; Jan J. W. Lagendijk (Comput. Methods Programs Biomed., 2009)

Automatic estimation of registration parameters: image similarity and regularization. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Josien P. W. Pluim (Image Processing, 2010)

Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE). - Robin Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Max A. Viergever; Marco van Vulpen; Josien P. W. Pluim (IEEE Trans. Medical Imaging, 2010)

Local atlas selection and performance estimation in multi-atlas based segmentation. - Robin Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (ISBI, 2011)

Label fusion in multi-atlas based segmentation with user-defined local weights. - Robin Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (ISBI, 2011)

Segmentation of Cervical Images by Inter-subject Registration with a Statistical Organ Model. - Floris F. Berendsen; Uulke A. van der Heide; Thomas R. Langerak; Alexis N. T. J. Kotte; Josien P. W. Pluim (Abdominal Imaging, 2011)

Evaluating and improving label fusion in atlas-based segmentation using the surface distance. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (Image Processing, 2011)

Free-Form Registration Involving Disappearing Structures: Application to Brachytherapy MRI. - Floris F. Berendsen; Alexis N. T. J. Kotte; Astrid A. C. de Leeuw; Max A. Viergever; Josien P. W. Pluim (Abdominal Imaging, 2013)

Expert-driven label fusion in multi-atlas-based segmentation of the prostate using weighted atlases. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Marco van Vulpen; Josien P. W. Pluim (Int. J. Comput. Assist. Radiol. Surg., 2013)

Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR. - Floris F. Berendsen; Uulke A. van der Heide; Thomas R. Langerak; Alexis N. T. J. Kotte; Josien P. W. Pluim (Comput. Vis. Image Underst., 2013)

Registration of organs with sliding interfaces and changing topologies. - Floris F. Berendsen; Alexis N. T. J. Kotte; Max A. Viergever; Josien P. W. Pluim (Image Processing, 2014)

Improving label fusion in multi-atlas based segmentation by locally combining atlas selection and performance estimation. - Thomas R. Langerak; Uulke A. van der Heide; Alexis N. T. J. Kotte; Floris F. Berendsen; Josien P. W. Pluim (Comput. Vis. Image Underst., 2015)

CBCT-to-CT synthesis with a single neural network for head-and-neck, lung and breast cancer adaptive radiotherapy. - Matteo Maspero; Mark H. F. Savenije; Tristan C. F. van Heijst; Joost J. C. Verhoeff; Alexis N. T. J. Kotte; Anette C. Houweling; Cornelis A. T. van den Berg (CoRR, 2019)