Approximation Algorithms for Sorting Permutations by Fragmentation-Weighted Operations. - Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (AlCoB, 2018)

Sorting λ-Permutations by λ-Operations. - Guilherme Henrique Santos Miranda; Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (BSB, 2018)

Approximation Algorithms for Sorting Permutations by Length-Weighted Short Rearrangements. - Alexsandro Oliveira Alexandrino; Guilherme Henrique Santos Miranda; Carla Negri Lintzmayer; Zanoni Dias (LAGOS, 2019)

Sorting by Reversals and Transpositions with Proportion Restriction. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2020)

Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems. - Pedro Olímpio Pinheiro; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Cid Carvalho de Souza; Zanoni Dias (BSB, 2020)

Sorting permutations by fragmentation-weighted operations. - Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (J. Bioinform. Comput. Biol., 2020)

On the Complexity of Some Variations of Sorting by Transpositions. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Univers. Comput. Sci., 2020)

Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2021)

Reversals Distance Considering Flexible Intergenic Regions Sizes. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2021)

Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (LAGOS, 2021)

Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes. - Gabriel Siqueira; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Zanoni Dias (BSB, 2021)

Approximation Algorithms for Sorting λ-Permutations by λ-Operations. - Guilherme Henrique Santos Miranda; Alexsandro Oliveira Alexandrino; Carla Negri Lintzmayer; Zanoni Dias (Algorithms, 2021)

An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2021)

Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Zanoni Dias (Algorithms Mol. Biol., 2021)

Incorporating intergenic regions into reversal and transposition distances with indels. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2021)

Reversals and transpositions distance with proportion restriction. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2021)

Genome Rearrangement Distance with Reversals, Transpositions, and Indels. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2021)

Length-weighted λ-rearrangement distance. - Alexsandro Oliveira Alexandrino; Guilherme Henrique Santos Miranda; Carla Negri Lintzmayer; Zanoni Dias (J. Comb. Optim., 2021)

Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (ISBRA, 2022)

A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2022)

Sorting by k-Cuts on Signed Permutations. - Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2022)

A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2022)

Algorithms for the Maximum Eulerian Cycle Decomposition Problem. - Pedro Olímpio Pinheiro; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Cid C. de Souza; Zanoni Dias (CoRR, 2022)

Labeled Cycle Graph for Transposition and Indel Distance. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2022)

Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Zanoni Dias (ISBRA, 2023)

Block Interchange and Reversal Distance on Unbalanced Genomes. - Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2023)

Approximation algorithms for sorting by k-cuts on signed permutations. - Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (J. Comb. Optim., 2023)

Reversal and Indel Distance With Intergenic Region Information. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2023)

Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2023)

Signed rearrangement distances considering repeated genes, intergenic regions, and indels. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Zanoni Dias (J. Comb. Optim., 2023)

Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2024)

Heuristics based on Adjacency Graph Packing for DCJ Distance Considering Intergenic Regions. - Gabriel Siqueira; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Zanoni Dias (BSB, 2024)

Variações do Problema de Distância de Rearranjos. - Alexsandro Oliveira Alexandrino (CoRR, 2024)

Rearrangement Distance Problems: An updated survey. - Andre Rodrigues Oliveira; Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Ulisses Dias; Zanoni Dias (ACM Comput. Surv., 2024)

Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs. - Gabriel Siqueira; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Zanoni Dias (J. Heuristics, 2024)