Molecular Computation for Genetic Algorithms. - Juan Castellanos; S. Leiva; Jose Rodrigo; Alfonso Rodríguez-Patón (Rough Sets and Current Trends in Computing, 1998)

Variantes de la concatenación en computación con ADN. - Alfonso Rodríguez-Patón Aradas (1999)

Computing with Membranes: P Systems with Worm-Objects. - Juan Castellanos; Gheorghe Paun; Alfonso Rodríguez-Patón (SPIRE, 2000)

Conditional Concatenation. - Jürgen Dassow; Carlos Martín-Vide; Gheorghe Paun; Alfonso Rodríguez-Patón (Fundam. Informaticae, 2000)

On P Systems with Membrane Creation. - Carlos Martín-Vide; Gheorghe Paun; Alfonso Rodríguez-Patón (Comput. Sci. J. Moldova, 2001)

Further Remarks on P Systems with Symport Rules. - Andrei Paun; Gheorghe Paun; Alfonso Rodríguez-Patón (Sci. Ann. Cuza Univ., 2001)

On the Universality of P Systems with Membrane Creation. - Alfonso Rodríguez-Patón (Bull. EATCS, 2001)

A New Class of Symbolic Abstract Neural Nets: Tissue P Systems. - Carlos Martín-Vide; Juan Pazos; Gheorghe Paun; Alfonso Rodríguez-Patón (COCOON, 2002)

MEGICO: An Intelligent Knowledge Management Methodology. - José Luis Maté; Luis Felipe Paradela; Juan Pazos; Alfonso Rodríguez-Patón; Andrés Silva (EKAW, 2002)

On the Power of P Systems with DNA-Worm-Objects. - José Luis Maté; Alfonso Rodríguez-Patón; Andrés Silva (Fundam. Informaticae, 2002)

Restricted Concatenation Inspired by DNA Strand Assembly - Carlos Martín-Vide; Alfonso Rodríguez-Patón (Grammars and Automata for String Processing, 2003)

Solving SAT in Linear Time with a Neural-Like Membrane System. - Juan Pazos; Alfonso Rodríguez-Patón; Andrés Silva (IWANN (1), 2003)

Tissue P systems. - Carlos Martín-Vide; Gheorghe Paun; Juan Pazos; Alfonso Rodríguez-Patón (Theor. Comput. Sci., 2003)

A DNA Algorithm for the Hamiltonian Path Problem Using Microfluidic Systems. - Lucas Ledesma; Juan Pazos; Alfonso Rodríguez-Patón (Aspects of Molecular Computing, 2004)

Grammar Based Crossover Operator in Genetic Programming. - Daniel Manrique; Fernando Márquez; Juan Rios; Alfonso Rodríguez-Patón (IWINAC (2), 2005)

Symport/Antiport P Systems with Three Objects Are Universal. - Gheorghe Paun; Mario J. Pérez-Jiménez; Juan Pazos; Alfonso Rodríguez-Patón (Fundam. Informaticae, 2005)

A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem. - Lucas Ledesma; Daniel Manrique; Alfonso Rodríguez-Patón (Soft Comput., 2005)

P Systems with Active Membranes Characterize PSPACE. - Petr Sosík; Alfonso Rodríguez-Patón (DNA, 2006)

P Systems with Symport/Antiport and Time. - Hitesh Nagda; Andrei Paun; Alfonso Rodríguez-Patón (Workshop on Membrane Computing, 2006)

Initialization Method for Grammar-Guided Genetic Programming. - Marc García-Arnau; Daniel Manrique; J. Ríos; Alfonso Rodríguez-Patón (SGAI Conf., 2006)

Evolutionary system for automatically constructing and adapting radial basis function networks. - Daniel Manrique; Juan Rios; Alfonso Rodríguez-Patón (Neurocomputing, 2006)

Algebraic properties of substitution on trajectories. - Michael Domaratzki; Petr Sosík; Alfonso Rodríguez-Patón (Theor. Comput. Sci., 2006)

Towards a Robust Biocomputing Solution of Intractable Problems. - Marc García-Arnau; Daniel Manrique; Alfonso Rodríguez-Patón; Petr Sosík (DNA, 2007)

A Parallel DNA Algorithm Using a Microfluidic Device to Build Scheduling Grids. - Marc García-Arnau; Daniel Manrique; Alfonso Rodríguez-Patón (IWINAC (1), 2007)

On Flip-Flop Membrane Systems with Proteins. - Andrei Paun; Alfonso Rodríguez-Patón (Workshop on Membrane Computing, 2007)

A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem. - Marc García-Arnau; Daniel Manrique; Alfonso Rodríguez-Patón; Petr Sosík (Biosyst., 2007)

Membrane computing and complexity theory: A characterization of PSPACE. - Petr Sosík; Alfonso Rodríguez-Patón (J. Comput. Syst. Sci., 2007)

Initialization method for grammar-guided genetic programming. - Marc García-Arnau; Daniel Manrique; Juan Rios; Alfonso Rodríguez-Patón (Knowl. Based Syst., 2007)

Towards a lessons learned system for critical software. - Javier Andrade Garda; Juan Ares Casal; Rafael García; Juan Pazos; Santiago Rodríguez Yáñez; Alfonso Rodríguez-Patón; Andrés Silva (Reliab. Eng. Syst. Saf., 2007)

Crossover and mutation operators for grammar-guided genetic programming. - Jorge Couchet; Daniel Manrique; Juan Rios; Alfonso Rodríguez-Patón (Soft Comput., 2007)

Normal forms for spiking neural P systems. - Oscar H. Ibarra; Andrei Paun; Gheorghe Paun; Alfonso Rodríguez-Patón; Petr Sosík; Sara Woodworth (Theor. Comput. Sci., 2007)

Sequentiality Induced by Spike Number in SNP Systems. - Oscar H. Ibarra; Andrei Paun; Alfonso Rodríguez-Patón (DNA, 2008)

Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation. - John Jack; Andrei Paun; Alfonso Rodríguez-Patón (Workshop on Membrane Computing, 2008)

Hopcroft's Minimization Technique: Queues or Stacks?. - Andrei Paun; Mihaela Paun; Alfonso Rodríguez-Patón (CIAA, 2008)

Discrete Nondeterministic Modeling of the Fas Pathway. - John Jack; Alfonso Rodríguez-Patón; Oscar H. Ibarra; Andrei Paun (Int. J. Found. Comput. Sci., 2008)

On the power of elementary features in spiking neural P systems. - Marc García-Arnau; David Pérez; Alfonso Rodríguez-Patón; Petr Sosík (Nat. Comput., 2008)

A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme. - Jesús M. Miró Bueno; Alfonso Rodríguez-Patón (IWANN (2), 2009)

On the Power of Computing with Proteins on Membranes. - Petr Sosík; Andrei Paun; Alfonso Rodríguez-Patón; David Pérez (Workshop on Membrane Computing, 2009)

Spiking Neural P Systems: Stronger Normal Forms. - Marc García-Arnau; David Pérez; Alfonso Rodríguez-Patón; Petr Sosík (Int. J. Unconv. Comput., 2009)

Sequential SNP systems based on min/max spike number. - Oscar H. Ibarra; Andrei Paun; Alfonso Rodríguez-Patón (Theor. Comput. Sci., 2009)

On the Hopcroft's minimization technique for DFA and DFCA. - Andrei Paun; Mihaela Paun; Alfonso Rodríguez-Patón (Theor. Comput. Sci., 2009)

Grammar-Guided Genetic Programming. - Daniel Manrique; Juan Rios; Alfonso Rodríguez-Patón (Encyclopedia of Artificial Intelligence, 2009)

Polynomial Complexity Classes in Spiking Neural P Systems. - Petr Sosík; Alfonso Rodríguez-Patón; Lucie Ciencialová (Int. Conf. on Membrane Computing, 2010)

Inference with DNA Molecules. - Alfonso Rodríguez-Patón; José María Larrea; Iñaki Sainz de Murieta (UC, 2010)

Biomolecular Computing Devices in Synthetic Biology. - Jesús M. Miró Bueno; Alfonso Rodríguez-Patón (Int. J. Nanotechnol. Mol. Comput., 2010)

Autonomous Resolution Based on DNA Strand Displacement. - Alfonso Rodríguez-Patón; Iñaki Sainz de Murieta; Petr Sosík (DNA, 2011)

Poster: Biochemical signaling: A discrete simulation with memory enhancement. - Andrei Paun; Mihaela Paun; Alfonso Rodríguez-Patón; John Jack (ICCABS, 2011)

Simulating a Rock-Scissors-Paper Bacterial Game with a Discrete Cellular Automaton. - Pablo Gómez Esteban; Alfonso Rodríguez-Patón (IWINAC (2), 2011)

Spiking Neural P Systems with Several Types of Spikes. - Mihai Ionescu; Gheorghe Paun; Mario J. Pérez-Jiménez; Alfonso Rodríguez-Patón (Int. J. Comput. Commun. Control, 2011)

P Systems with proteins on Membranes: a Survey. - Andrei Paun; Mihaela Paun; Alfonso Rodríguez-Patón; Manuela Sidoroff (Int. J. Found. Comput. Sci., 2011)

On the Power of Families of Recognizer Spiking Neural P Systems. - Petr Sosík; Alfonso Rodríguez-Patón; Ludek Cienciala (Int. J. Found. Comput. Sci., 2011)

A review of the nondeterministic waiting time algorithm. - John Jack; Andrei Paun; Alfonso Rodríguez-Patón (Nat. Comput., 2011)

On the scalability of biocomputing algorithms: The case of the maximum clique problem. - Daniel Manrique; Alfonso Rodríguez-Patón; Petr Sosík (Theor. Comput. Sci., 2011)

Distributed Computing with Prokaryotic Immune Systems. - Niall Murphy; Alfonso Rodríguez-Patón (ICARIS, 2012)

DNA biosensors that reason. - Iñaki Sainz de Murieta; Alfonso Rodríguez-Patón (Biosyst., 2012)

Probabilistic Reasoning with an Enzyme-Driven DNA Device. - Iñaki Sainz de Murieta; Alfonso Rodríguez-Patón (DNA, 2013)

P systems with proteins on membranes characterize PSPACE. - Petr Sosík; Andrei Paun; Alfonso Rodríguez-Patón (Theor. Comput. Sci., 2013)

DNA strand displacement system running logic programs. - Alfonso Rodríguez-Patón; Iñaki Sainz de Murieta; Petr Sosík (Biosyst., 2014)

Probabilistic reasoning with a Bayesian DNA device based on strand displacement. - Iñaki Sainz de Murieta; Alfonso Rodríguez-Patón (Nat. Comput., 2014)

BactoSim - An Individual-Based Simulation Environment for Bacterial Conjugation. - Antonio Prestes García; Alfonso Rodríguez-Patón (PAAMS, 2015)

A Preliminary Assessment of Three Strategies for the Agent-Based Modeling of Bacterial Conjugation. - Antonio Prestes García; Alfonso Rodríguez-Patón (PACBB, 2015)

An Autonomous In Vivo Dual Selection Protocol for Boolean Genetic Circuits. - David Benes; Petr Sosík; Alfonso Rodríguez-Patón (Artif. Life, 2015)

EvoPER - An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast. - Antonio Prestes García; Alfonso Rodríguez-Patón (PeerJ Prepr., 2016)

Iteratively collective prediction of disease-gene associations through the incomplete network. - Xiangyi Meng; Quan Zou 001; Alfonso Rodríguez-Patón; Xiangxiang Zeng (BIBM, 2017)

Simulating multicell populations with an accelerated gro simulator. - P. Martín Gutiérrez; Alfonso Rodríguez-Patón (ECAL, 2017)

P Systems Simulating Bacterial Conjugation: Universality and Properties. - Andrei Paun; Alfonso Rodríguez-Patón (Fundam. Informaticae, 2017)

Theory and Application of Bio-inspired Intelligence and Methods. - Xingyi Zhang 001; Alfonso Rodríguez-Patón Aradas; Xiangxiang Zeng; Tao Song 001 (J. Univers. Comput. Sci., 2017)

Directed evolution of biocircuits using conjugative plasmids and CRISPR-Cas9: design and in silico experiments. - David Benes; Alfonso Rodríguez-Patón; Petr Sosík (Nat. Comput., 2017)

LncRNA-disease association prediction based on neighborhood information aggregation in neural network. - Hongjie Chen 003; Xun Wang 010; Xuan Zhang 010; Xiangxiang Zeng; Tao Song 001; Alfonso Rodríguez-Patón (BIBM, 2018)

An Implementation of Elementary Arithmetic with Virus Machine. - Xiaoshan Yan; Xiangrong Liu; Xiangxiang Zeng; Alfonso Rodríguez-Patón (Enjoying Natural Computing, 2018)

A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment. - Shanchen Pang; Tong Ding; Alfonso Rodríguez-Patón; Tao Song 001; Pan Zheng 001 (IEEE Access, 2018)

Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets. - Xiangxiang Zeng; Jiawei Lin; Chen Lin 001; Xiangrong Liu; Alfonso Rodríguez-Patón (IEEE Access, 2018)

Preface. - Matteo Cavaliere; Alfonso Rodríguez-Patón (Nat. Comput., 2018)

Spiking Neural P Systems With Colored Spikes. - Tao Song 001; Alfonso Rodríguez-Patón; Pan Zheng 001; Xiangxiang Zeng (IEEE Trans. Cogn. Dev. Syst., 2018)

Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition. - Tongmao Ma; Shaohua Hao; Xun Wang 010; Alfonso Rodríguez-Patón; Shudong Wang; Tao Song 001 (IEEE Access, 2019)

U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images. - Tao Song 001; Fan Meng; Alfonso Rodríguez-Patón; Pibao Li; Pan Zheng 001; Xun Wang 010 (IEEE Access, 2019)

A Parallel Image Skeletonizing Method Using Spiking Neural P Systems with Weights. - Tao Song 001; Shanchen Pang; Shaohua Hao; Alfonso Rodríguez-Patón; Pan Zheng 001 (Neural Process. Lett., 2019)

Meta-Path Methods for Prioritizing Candidate Disease miRNAs. - Xuan Zhang 010; Quan Zou 001; Alfonso Rodríguez-Patón; Xiangxiang Zeng (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

LDCNN-DTI: A Novel Light Deep Convolutional Neural Network for Drug-Target Interaction Predictions. - Shudong Wang; Zhenzhen Du; Mao Ding; Renteng Zhao; Alfonso Rodríguez-Patón; Tao Song 001 (BIBM, 2020)

Computational methods for identifying the critical nodes in biological networks. - Xiangrong Liu; Zengyan Hong; Juan Liu 003; Yuan Lin; Alfonso Rodríguez-Patón; Quan Zou 001; Xiangxiang Zeng (Briefings Bioinform., 2020)

Applying Evolutionary Metaheuristics for Parameter Estimation of Individual-Based Models. - Antonio Prestes García; Alfonso Rodríguez-Patón (CoRR, 2020)

Deep Collaborative Filtering for Prediction of Disease Genes. - Xiangxiang Zeng; Yinglai Lin; Yuying He; Linyuan Lü; Xiaoping Min; Alfonso Rodríguez-Patón (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Neural-like P systems with plasmids. - Francis George C. Cabarle; Xiangxiang Zeng; Niall Murphy; Tao Song 001; Alfonso Rodríguez-Patón; Xiangrong Liu (Inf. Comput., 2021)

Monodirectional tissue P systems with channel states. - Bosheng Song; Xiangxiang Zeng; Alfonso Rodríguez-Patón (Inf. Sci., 2021)

KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer's disease drug repositions. - Shudong Wang; Zhenzhen Du; Mao Ding; Alfonso Rodríguez-Patón; Tao Song 001 (Appl. Intell., 2022)

AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug-drug interaction prediction. - Shanchen Pang; Ying Zhang; Tao Song 001; Xudong Zhang; Xun Wang 010; Alfonso Rodríguez-Patón (Briefings Bioinform., 2022)

Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug-drug interactions prediction. - Xudong Zhang; Gan Wang; Xiangyu Meng 005; Shuang Wang; Ying Zhang; Alfonso Rodríguez-Patón; Jianmin Wang 016; Xun Wang 010 (Briefings Bioinform., 2022)

MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network. - Xue Li 019; Peifu Han; Wenqi Chen; Changnan Gao; Shuang Wang; Tao Song 001; Muyuan Niu; Alfonso Rodríguez-Patón (Briefings Bioinform., 2023)