A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. - Lang Li 001; Alfred S. L. Cheng; Victor X. Jin; Henry H. Paik; Meiyun Fan; Xiaoman Li; Wei Zhang; Jason Robarge; Curtis Balch; Ramana V. Davuluri; Sun Kim; Tim Hui-Ming Huang; et al. (Bioinform., 2006)

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. - Huaxia Qin; Michael W. Y. Chan; Sandya Liyanarachchi; Curtis Balch; Dustin P. Potter; Irene J. Souriraj; Alfred S. L. Cheng; Francisco J. Agosto-Perez; Elena Nikonova; Pearlly Yan; Huey-Jen Lin; Kenneth P. Nephew; et al. (BMC Syst. Biol., 2009)

A unified framework for integrative study of heterogeneous gene regulatory mechanisms. - Qin Cao; Zhenghao Zhang; Alexander Xi Fu; Qiong Wu; Tin-Lap Lee; Eric Lo 001; Alfred S. L. Cheng; Chao Cheng; Danny Leung; Kevin Y. Yip (Nat. Mach. Intell., 2020)

Multi-omic analysis suggests tumor suppressor genes evolved specific promoter features to optimize cancer resistance. - Dan Huang; Xiansong Wang; Yingzhi Liu; Ziheng Huang; Xiaoxu Hu; Wei Hu; Qing Li; Hung Chan; Yidan Zou; Idy H. T. Ho; Yan Wang; Alfred S. L. Cheng; et al. (Briefings Bioinform., 2021)