PepComposer: computational design of peptides binding to a given protein surface. - Agnieszka Obarska-Kosinska; Alfredo Iacoangeli; Rosalba Lepore; Anna Tramontano (Nucleic Acids Res., 2016)

DNAscan: personal computer compatible NGS analysis, annotation and visualisation. - Alfredo Iacoangeli; Ahmad Al Khleifat; William Sproviero; Aleksey Shatunov; A. R. Jones; S. L. Morgan; Alan Pittman; Richard J. B. Dobson; S. J. Newhouse; Ammar Al-Chalabi (BMC Bioinform., 2019)

DGLinker: flexible knowledge-graph prediction of disease-gene associations. - Jiajing Hu; Rosalba Lepore; Richard J. B. Dobson; Ammar Al-Chalabi; Daniel Bean; Alfredo Iacoangeli (Nucleic Acids Res., 2021)

An assessment of bioinformatics tools for the detection of human endogenous retroviral insertions in short-read genome sequencing data. - Harry Bowles; Renata Kabiljo; Ahmad Al Khleifat; Ashley Jones; John P. Quinn; Richard J. B. Dobson; Chad M. Swanson; Ammar Al-Chalabi; Alfredo Iacoangeli (Frontiers Bioinform., 2022)

GEOexplorer: a webserver for gene expression analysis and visualisation. - Guy P. Hunt; Luigi Grassi; Rafael Henkin; Fabrizio Smeraldi; Thomas P. Spargo; Renata Kabiljo; Sulev Koks; Zina M. Ibrahim; Richard J. B. Dobson; Ammar Al-Chalabi; Michael R. Barnes; Alfredo Iacoangeli (Nucleic Acids Res., 2022)

DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data. - Heather Marriott; Renata Kabiljo; Ahmad Al Khleifat; Richard J. B. Dobson; Ammar Al-Chalabi; Alfredo Iacoangeli (Bioinform., 2023)

VariantSurvival: a tool to identify genotype-treatment response. - Thomas Krannich; Marina Herrera Sarrias; Hiba Ben Aribi; Moustafa Shokrof; Alfredo Iacoangeli; Ammar Al-Chalabi; Fritz J. Sedlazeck; Ben Busby; Ahmad Al Khleifat (Frontiers Bioinform., 2023)