Large-scale subject-specific cerebral arterial tree modeling using automated parametric mesh generation for blood flow simulation. - Mahsa Ghaffari; Kevin Tangen; Ali Alaraj; Xinjian Du; Fady T. Charbel; Andreas A. Linninger (Comput. Biol. Medicine, 2017)

Gap-free segmentation of vascular networks with automatic image processing pipeline. - Chih-Yang Hsu; Mahsa Ghaffari; Ali Alaraj; Michael Flannery; Xiaohong Joe Zhou; Andreas A. Linninger (Comput. Biol. Medicine, 2017)

Validation of parametric mesh generation for subject-specific cerebroarterial trees using modified Hausdorff distance metrics. - Mahsa Ghaffari; Lea Sanchez; Guoren Xu; Ali Alaraj; Xiaohong Joe Zhou; Fady T. Charbel; Andreas A. Linninger (Comput. Biol. Medicine, 2018)

Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex. - Grant Hartung; Claudia Vesel; Ryan Morley; Ali Alaraj; John G. Sled; David Kleinfeld; Andreas A. Linninger (PLoS Comput. Biol., 2018)

Voxelized simulation of cerebral oxygen perfusion elucidates hypoxia in aged mouse cortex. - Grant Hartung; Shoale Badr; Mohammad Moeini; Frédéric Lesage; David Kleinfeld; Ali Alaraj; Andreas A. Linninger (PLoS Comput. Biol., 2021)