bHLHDB: A next generation database of basic helix loop helix transcription factors based on deep learning model. - Ali Burak Öncül; Yüksel Çelik; Necdet Mehmet Ünel; Mehmet Cengiz Baloglu (J. Bioinform. Comput. Biol., 2022)

Bitki transkripsiyon faktörlerinin hibrit derin öğrenme ile sınıflandırılması (Classification of plant transcription factors by hybrid deep learning) - Ali Burak Öncül (2022)

Expansin gene family database: A comprehensive bioinformatics resource for plant expansin multigene family. - Büsra Özkan Kök; Yasemin Celik Altunoglu; Ali Burak Öncül; Abdulkadir Karaci; Mehmet Cengiz Baloglu (J. Bioinform. Comput. Biol., 2023)

A hybrid deep learning model for classification of plant transcription factor proteins. - Ali Burak Öncül; Yüksel Çelik (Signal Image Video Process., 2023)