Ali Cakmak

According to our database, Ali Cakmak authored at least 35 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Predicting the predisposition to colorectal cancer based on SNP profiles of immune phenotypes using supervised learning models.

Ali Cakmak, Huzeyfe Ayaz, Soykan Arikan, Ali Reza Ibrahimzada, Seyda Demirkol, Dilara Sönmez, Mehmet T. Hakan, Saime T. Sürmen, Cem Horozoglu, Mehmet B. Dogan, Özlem Küçükhüseyin, Canan Cacina, Bayram Kiran, Ümit Zeybek, Mehmet Baysan, Ilhan Yaylim

Medical Biol. Eng. Comput., 2023

2021

Personalized Metabolic Analysis of Diseases.

Ali Cakmak, M. Hasan Celik

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Using positional sequence patterns to estimate the selectivity of SQL LIKE queries.

Mehmet Aytimur, Ali Cakmak

Expert Syst. Appl., 2021

Benchmarking Apache Spark and Hadoop MapReduce on Big Data Classification.

Taha Tekdogan, Ali Cakmak

Proceedings of the ICCBDC 2021: 5th International Conference on Cloud and Big Data Computing, Liverpool, United Kingdom, August 13, 2021

2020

Scalable classification of organisms into a taxonomy using hierarchical supervised learners.

Gihad N. Sohsah, Ali Reza Ibrahimzada, Huzeyfe Ayaz, Ali Cakmak

J. Bioinform. Comput. Biol., 2020

Exploring the power of supervised learning methods for company name disambiguation in microblog posts.

Esma Nafiye Polat, Ali Cakmak, Rabia Nuray-Turan

Turkish J. Electr. Eng. Comput. Sci., 2020

2019

Interactive exploratory soccer data analytics.

Emrullah Delibas, Ali Uzun, Mehmet Fatih Inan, Onur Guzey, Ali Cakmak

INFOR Inf. Syst. Oper. Res., 2019

2018

Estimating the selectivity of LIKE queries using pattern-based histograms.

Mehmet Aytimur, Ali Cakmak

Turkish J. Electr. Eng. Comput. Sci., 2018

Computational Modeling of Pass Effectiveness in Soccer.

Ali Cakmak, Ali Uzun, Emrullah Delibas

Adv. Complex Syst., 2018

2014

An online system for metabolic network analysis.

Abdullah Ercument Cicek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Zehra Meral Özsoyoglu, Gultekin Özsoyoglu

Database J. Biol. Databases Curation, 2014

High Impact Academic Paper Prediction Using Temporal and Topological Features.

Feruz Davletov, Ali Selman Aydin, Ali Cakmak

Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014

2013

PathCase-MAW: An Online Metabolic Network Analysis Workbench.

A. Ercüment Çiçek, Xinjian Qi, Ali Cakmak, Stephen R. Johnson, Xu Han, Sami Alshalwi, Gultekin Özsoyoglu

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

A New metabolomics Analysis Technique: steady-State metabolic Network Dynamics Analysis.

Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Ilya Bederman, Leigh Henderson, Mitchell L. Drumm, Gultekin Özsoyoglu

J. Bioinform. Comput. Biol., 2012

PathCase-SB: integrating data sources and providing tools for systems biology research.

Sarp A. Coskun, Xinjian Qi, Ali Cakmak, En Cheng, A. Ercüment Çiçek, Lei Yang, Rishiraj Jadeja, Ranjan K. Dash, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu

BMC Syst. Biol., 2012

2011

PathCase-SB architecture and database design.

Ali Cakmak, Xinjian Qi, Sarp A. Coskun, Mitali Das, En Cheng, A. Ercüment Çiçek, Nicola Lai, Gultekin Özsoyoglu, Z. Meral Özsoyoglu

BMC Syst. Biol., 2011

Computational interpretation of metabolomics measurements: steady-state metabolic network dynamics analysis.

Ali Cakmak, Xinjian Qi, A. Ercüment Çiçek, Gultekin Özsoyoglu

Proceedings of the ACM International Conference on Bioinformatics, 2011

2010

Querying metabolism under Different Physiological Constraints.

Ali Cakmak, Gultekin Özsoyoglu, Richard W. Hanson

J. Bioinform. Comput. Biol., 2010

Advanced querying interface for biochemical network databases.

Brendan Elliott, Stephen Mayes, Ali Cakmak, Gultekin Özsoyoglu, Z. Meral Özsoyoglu

Proceedings of the 2010 ACM Symposium on Applied Computing (SAC), 2010

Efficient query evaluation for DAG-shaped hierarchies.

En Cheng, Ali Cakmak, Z. Meral Özsoyoglu

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Analyzing metabolite measurements for automated prediction of underlying biological mechanisms.

Ali Cakmak, Arun Dsouza, Richard W. Hanson, Z. Meral Özsoyoglu

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009

Context-based literature digital collection search.

Nattakarn Ratprasartporn, Jonathan Po, Ali Cakmak, Sulieman Bani-Ahmad, Gultekin Özsoyoglu

VLDB J., 2009

Corrigendum for Elliott, B. <i>et al.</i>, 'PathCase pathways database system', Bioinformatics 2008, 24(21) 2526-2533.

Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gökhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu

Bioinform., 2009

PopulusLog: People information database.

Ali Cakmak, Mustafa Kirac, Gultekin Özsoyoglu

Proceedings of the 24th International Symposium on Computer and Information Sciences, 2009

A web-based data source for metabolomics.

Ali Cakmak, Arun Dsouza, Richard W. Hanson, Gultekin Özsoyoglu, Z. Meral Özsoyoglu

Proceedings of the 24th International Symposium on Computer and Information Sciences, 2009

2008

Discovering gene annotations in biomedical text databases.

Ali Cakmak, Gultekin Özsoyoglu

BMC Bioinform., 2008

PathCase: pathways database system.

Brendan Elliott, Mustafa Kirac, Ali Cakmak, Gökhan Yavas, Stephen Mayes, En Cheng, Yuan Wang, Chirag Gupta, Gultekin Özsoyoglu, Z. Meral Özsoyoglu

Bioinform., 2008

Taxonomy-superimposed graph mining.

Ali Cakmak, Gultekin Özsoyoglu

Proceedings of the EDBT 2008, 2008

2007

Mining biological networks for unknown pathways.

Ali Cakmak, Gultekin Özsoyoglu

Bioinform., 2007

Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways.

Ali Cakmak, Mustafa Kirac, Marc R. Reynolds, Z. Meral Özsoyoglu, Gultekin Özsoyoglu

Proceedings of the 19th International Conference on Scientific and Statistical Database Management, 2007

Annotating Genes Using Textual Patterns.

Ali Cakmak, Gultekin Özsoyoglu

Proceedings of the Biocomputing 2007, 2007

Evaluating Different Ranking Functions for Context-Based Literature Search.

Nattakarn Ratprasartporn, Sulieman Bani-Ahmad, Ali Cakmak, Jonathan Po, Gultekin Özsoyoglu

Proceedings of the 23rd International Conference on Data Engineering Workshops, 2007

2006

On Data and Visualization Models for Signaling Pathways.

Nattakarn Ratprasartporn, Ali Cakmak, Gultekin Özsoyoglu

Proceedings of the 18th International Conference on Scientific and Statistical Database Management, 2006

Task-Oriented Integrated Use of Biological Web Data Sources.

Mustafa Kirac, Ali Cakmak, Gultekin Özsoyoglu

Proceedings of the 18th International Conference on Scientific and Statistical Database Management, 2006

2005

Evaluating Publication Similarity Measures.

Sulieman Bani-Ahmad, Ali Cakmak, Gultekin Özsoyoglu, Abdullah Al-Hamdani

IEEE Data Eng. Bull., 2005

Evaluating Score and Publication Similarity Functions in Digital Libraries.

Sulieman Bani-Ahmad, Ali Cakmak, Abdullah Al-Hamdani, Gultekin Özsoyoglu

Proceedings of the Digital Libraries: Implementing Strategies and Sharing Experiences, 2005