A systematic atlas of chaperome deregulation topologies across the human cancer landscape. - Ali Hadizadeh Esfahani; Angelina Sverchkova; Julio Saez-Rodriguez; Andreas Schuppert; Marc Brehme (PLoS Comput. Biol., 2018)

FORESEE: a tool for the systematic comparison of translational drug response modeling pipelines. - Lisa-Katrin Turnhoff; Ali Hadizadeh Esfahani; Maryam Montazeri; Nina Kusch; Andreas Schuppert (Bioinform., 2019)

Metastable Regimes and Tipping Points of Biochemical Networks with Potential Applications in Precision Medicine. - Satya Swarup Samal; Jeyashree Krishnan; Ali Hadizadeh Esfahani; Christoph Lüders; Andreas Weber 004; Ovidiu Radulescu (Automated Reasoning for Systems Biology and Medicine, 2019)

Methodological challenges in translational drug response modeling in cancer: A systematic analysis with FORESEE. - Lisa-Katrin Turnhoff; Ali Hadizadeh Esfahani; Andreas Schuppert (PLoS Comput. Biol., 2020)