CRISPRpred(SEQ): a sequence-based method for sgRNA on target activity prediction using traditional machine learning. - Ali Haisam Muhammad Rafid; Md. Toufikuzzaman; Mohammad Saifur Rahman 001; M. Sohel Rahman (BMC Bioinform., 2020)

Phylogenetic Analyses of SARS-CoV-2 Strains Reveal Its Link to the Spread of COVID-19 Across the Globe. - Shashata Sawmya; Arpita Saha; Sadia Tasnim; Naser Anjum Samudro; Md. Toufikuzzaman; Ali Haisam Muhammad Rafid; Mohammad Saifur Rahman 001; M. Sohel Rahman; Tanvir Alam (MedInfo, 2021)

Neural Network Reduction with Guided Regularizers. - Ali Haisam Muhammad Rafid; Adrian Sandu (CoRR, 2023)

Adversarial Training Using Feedback Loops. - Ali Haisam Muhammad Rafid; Adrian Sandu (CoRR, 2023)

A Scalable Training-Free Diffusion Model for Uncertainty Quantification. - Ali Haisam Muhammad Rafid; Junqi Yin; Yuwei Geng; Siming Liang; Feng Bao 005; Lili Ju; Guannan Zhang (SC Workshops, 2024)