Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. - Ali Navid; Eivind Almaas (BMC Syst. Biol., 2012)

System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris. - Ali Navid; Yongqin Jiao; Sergio Ernesto Wong; Jennifer Pett-Ridge (BMC Bioinform., 2019)

Towards dynamic simulation of a whole cell model. - Jae-Seung Yeom; Konstantia Georgouli; Robert Blake; Ali Navid (BCB, 2021)