Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia. - Ali Nematbakhsh; Wenzhao Sun; Pavel A. Brodskiy; Aboutaleb Amiri; Cody Narciso; Zhiliang Xu; Jeremiah J. Zartman; Mark S. Alber (PLoS Comput. Biol., 2017)

Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix. - Ali Nematbakhsh; Megan Levis; Nilay Kumar; Weitao Chen; Jeremiah J. Zartman; Mark S. Alber (PLoS Comput. Biol., 2020)

Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance. - Mikahl Banwarth-Kuhn; Kevin Rodriguez; Christian Michael; Calvin-Khang Ta; Alexander Plong; Eric Bourgain-Chang; Ali Nematbakhsh; Weitao Chen; Amit K. Roy-Chowdhury; G. Venugopala Reddy; Mark S. Alber (PLoS Comput. Biol., 2022)

STENCIL: A web templating engine for visualizing and sharing life science datasets. - Qi Sun; Ali Nematbakhsh; Prashant Kumar Kuntala; Gretta Kellogg; B. Franklin Pugh; William K. M. Lai (PLoS Comput. Biol., 2022)