Deep-Reaching Hydrodynamic Flow Confinement: Micrometer-Scale Liquid Localization for Open Substrates With Topographical Variations. - Ali Oskooei; Govind V. Kaigala (IEEE Trans. Biomed. Eng., 2017)

Network-based Biased Tree Ensembles (NetBiTE) for Drug Sensitivity Prediction and Drug Sensitivity Biomarker Identification in Cancer. - Ali Oskooei; Matteo Manica; Roland Mathis; María Rodríguez Martínez (CoRR, 2018)

PaccMann: Prediction of anticancer compound sensitivity with multi-modal attention-based neural networks. - Ali Oskooei; Jannis Born; Matteo Manica; Vigneshwari Subramanian; Julio Sáez-Rodríguez; María Rodríguez Martínez (CoRR, 2018)

Towards Explainable Anticancer Compound Sensitivity Prediction via Multimodal Attention-based Convolutional Encoders. - Matteo Manica; Ali Oskooei; Jannis Born; Vigneshwari Subramanian; Julio Sáez-Rodríguez; María Rodríguez Martínez (CoRR, 2019)

Reinforcement learning-driven de-novo design of anticancer compounds conditioned on biomolecular profiles. - Jannis Born; Matteo Manica; Ali Oskooei; María Rodríguez Martínez (CoRR, 2019)

DeStress: Deep Learning for Unsupervised Identification of Mental Stress in Firefighters from Heart-rate Variability (HRV) Data. - Ali Oskooei; Sophie Mai Chau; Jonas R. M. Weiss; Arvind Sridhar; María Rodríguez Martínez; Bruno Michel (CoRR, 2019)

AI Enables Explainable Drug Sensitivity Screenings. - Matteo Manica; Ali Oskooei; Jannis Born (ERCIM News, 2019)

PaccMannRL: Designing Anticancer Drugs From Transcriptomic Data via Reinforcement Learning. - Jannis Born; Matteo Manica; Ali Oskooei; Joris Cadow; María Rodríguez Martínez (RECOMB, 2020)

Named Entity Recognition in the Legal Domain using a Pointer Generator Network. - Stavroula Skylaki; Ali Oskooei; Omar Bari; Nadja Herger; Zac Kriegman (CoRR, 2020)

PaccMann: a web service for interpretable anticancer compound sensitivity prediction. - Joris Cadow; Jannis Born; Matteo Manica; Ali Oskooei; María Rodríguez Martínez (Nucleic Acids Res., 2020)

Legal Entity Extraction using a Pointer Generator Network. - Stavroula Skylaki; Ali Oskooei; Omar Bari; Nadja Herger; Zac Kriegman (ICDM (Workshops), 2021)