Active Learning for Turkish Text Classification. - Ali Osman Berk Sapci; Öznur Tastan; Reyyan Yeniterzi (SIU, 2020)

Focusing on Possible Named Entities in Active Named Entity Label Acquisition. - Ali Osman Berk Sapci; Öznur Tastan; Reyyan Yeniterzi (CoRR, 2021)

CONSULT-II: Taxonomic Identification Using Locality Sensitive Hashing. - Ali Osman Berk Sapci; Eleonora Rachtman; Siavash Mirarab (RECOMB-CG, 2023)

MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing. - Ali Osman Berk Sapci; Shan Lu; Shuchen Yan; Ferhat Ay; Öznur Tastan; Sündüz Keles (Bioinform., 2023)

Memory-Bound and Taxonomy-Aware K-Mer Selection for Ultra-Large Reference Libraries. - Ali Osman Berk Sapci; Siavash Mirarab (RECOMB, 2024)

Focusing on potential named entities during active label acquisition. - Ali Osman Berk Sapci; Hasan Kemik; Reyyan Yeniterzi; Öznur Tastan (Nat. Lang. Eng., 2024)

Alignment-Free Estimation of Read to Genome Distances and Its Applications. - Ali Osman Berk Sapci; Siavash Mirarab (RECOMB, 2025)