Hubs and Non-hubs in Protein-Protein Interaction Networks: A Biophysical Interpretation. - Ali Salehzadeh-Yazdi; Ali Masoudi-Nejad; Ali Akbar Saboury; Shiva Akbari-Birgani (DEXA Workshops, 2012)

Computational structure analysis of biomacromolecule complexes by interface geometry. - Sedigheh Mahdavi; Ali Salehzadeh-Yazdi; Ali Mohades; Ali Masoudi-Nejad (Comput. Biol. Chem., 2013)

Cancerome: A hidden informative subnetwork of the diseasome. - Mahdi Jalili; Ali Salehzadeh-Yazdi; Marjan Yaghmaie; Ardeshir Ghavamzadeh; Kamran Alimoghaddam (Comput. Biol. Medicine, 2016)

A systematic survey of centrality measures for protein-protein interaction networks. - Minoo Ashtiani; Ali Salehzadeh-Yazdi; Zahra Razaghi-Moghadam; Holger Hennig; Olaf Wolkenhauer; Mehdi Mirzaie; Mohieddin Jafari (BMC Syst. Biol., 2018)

Evolution of computational models in BioModels Database and the Physiome Model Repository. - Martin Scharm; Tom Gebhardt; Vasundra Touré; Andrea Bagnacani; Ali Salehzadeh-Yazdi; Olaf Wolkenhauer; Dagmar Waltemath (BMC Syst. Biol., 2018)

GEMtractor: extracting views into genome-scale metabolic models. - Martin Scharm; Olaf Wolkenhauer; Mahdi Jalili; Ali Salehzadeh-Yazdi (Bioinform., 2020)