Combination treatment optimization using a pan-cancer pathway model. - Robin Schmucker; Gabriele Farina; James R. Faeder; Fabian Fröhlich; Ali Sinan Saglam; Tuomas Sandholm (PLoS Comput. Biol., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface. - Adam Husár; Mariam Ordyan; Guadalupe C. Garcia; Joel G. Yancey; Ali Sinan Saglam; James R. Faeder; Thomas M. Bartol; Mary B. Kennedy; Terrence J. Sejnowski (PLoS Comput. Biol., 2024)