Simultaneous identification of duplications and lateral transfers. - Michael T. Hallett; Jens Lagergren; Ali Tofigh (RECOMB, 2004)

Using Trees to Capture Reticulate Evolution : Lateral Gene Transfers and Cancer Progression. - Ali Tofigh (2009)

A Global Structural EM Algorithm for a Model of Cancer Progression. - Ali Tofigh; Erik Sjölund; Mattias Höglund; Jens Lagergren (NIPS, 2011)

Simultaneous Identification of Duplications and Lateral Gene Transfers. - Ali Tofigh; Michael T. Hallett; Jens Lagergren (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Investigating Commercial Pay-Per-Install and the Distribution of Unwanted Software. - Kurt Thomas; Juan A. Elices Crespo; Ryan Rasti; Jean-Michel Picod; Cait Phillips; Marc-André Decoste; Chris Sharp; Fabio Tirelo; Ali Tofigh; Marc-Antoine Courteau; Lucas Ballard; Robert Shield; et al. (USENIX Security Symposium, 2016)