FunChIP: an R/Bioconductor package for functional classification of ChIP-seq shapes. - Alice C. L. Parodi; Laura M. Sangalli; Simone Vantini; Bruno Amati; Piercesare Secchi; Marco J. Morelli (Bioinform., 2017)

Association rule mining to identify transcription factor interactions in genomic regions. - Gaia Ceddia; Liuba Nausicaa Martino; Alice C. L. Parodi; Piercesare Secchi; Stefano Campaner; Marco Masseroli (Bioinform., 2020)