PIML: the Pathogen Information Markup Language. - Yongqun He; Richard R. Vines; Alice R. Wattam; Georgiy V. Abramochkin; Allan Dickerman; J. Dana Eckart; Bruno W. S. Sobral (Bioinform., 2005)

Genome Annotation and Comparison System. - Jing Zhao; Tian Xue; Boyu Yang 001; Kelly Williams; Alice R. Wattam; Rebecca Will; Bruce Sharp; Ron Kenyon; Oswald Crasta; Bruno W. S. Sobral (BIOCOMP, 2006)

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). - Ross A. Overbeek; Robert Olson; Gordon D. Pusch; Gary J. Olsen; James J. Davis 002; Terry Disz; Robert A. Edwards; Svetlana Gerdes; Bruce D. Parrello; Maulik Shukla; Veronika Vonstein; Alice R. Wattam; et al. (Nucleic Acids Res., 2014)

PATRIC, the bacterial bioinformatics database and analysis resource. - Alice R. Wattam; David Abraham; Oral Dalay; Terry Disz; Timothy Driscoll; Joseph L. Gabbard; Joseph J. Gillespie; Roger Gough; Deborah Hix; Ronald W. Kenyon; Dustin Machi; Chunhong Mao; et al. (Nucleic Acids Res., 2014)

Curation, integration and visualization of bacterial virulence factors in PATRIC. - Chunhong Mao; David Abraham; Alice R. Wattam; Meredith J. C. Wilson; Maulik Shukla; Hyun Seung Yoo; Bruno W. S. Sobral (Bioinform., 2015)

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. - Andrew S. Warren; Cristina Aurrecoechea; Brian P. Brunk; Prerak Desai; Scott J. Emrich; Gloria I. Giraldo-Calderón; Omar S. Harb; Deborah Hix; Daniel Lawson; Dustin Machi; Chunhong Mao; Michael McClelland; et al. (Bioinform., 2015)

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. - Alice R. Wattam; James J. Davis 002; Rida Assaf; Sébastien Boisvert; Thomas S. Brettin; Christopher Bun; Neal Conrad; Emily M. Dietrich; Terry Disz; Joseph L. Gabbard; Svetlana Gerdes; Christopher S. Henry; et al. (Nucleic Acids Res., 2017)

PATRIC as a unique resource for studying antimicrobial resistance. - Dionysios A. Antonopoulos; Rida Assaf; Ramy Karam Aziz; Thomas S. Brettin; Christopher Bun; Neal Conrad; James J. Davis 002; Emily M. Dietrich; Terry Disz; Svetlana Gerdes; Ronald W. Kenyon; Dustin Machi; et al. (Briefings Bioinform., 2019)

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. - James J. Davis 002; Alice R. Wattam; Ramy K. Aziz; Thomas S. Brettin; Ralph Butler; Rory Butler; Philippe Chlenski; Neal Conrad; Allan Dickerman; Emily M. Dietrich; Joseph L. Gabbard; Svetlana Gerdes; et al. (Nucleic Acids Res., 2020)

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. - Margo VanOeffelen; Marcus Nguyen; Derya Aytan-Aktug; Thomas S. Brettin; Emily M. Dietrich; Ronald W. Kenyon; Dustin Machi; Chunhong Mao; Robert Olson; Gordon D. Pusch; Maulik Shukla; Rick Stevens; et al. (Briefings Bioinform., 2021)

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. - Robert D. Olson; Rida Assaf; Thomas S. Brettin; Neal Conrad; Clark Cucinell; James J. Davis 002; Donald M. Dempsey; Allan Dickerman; Emily M. Dietrich; Ronald W. Kenyon; Mehmet Kuscuoglu; Elliot J. Lefkowitz; et al. (Nucleic Acids Res., 2023)