Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights. - Juan A. Sánchez; Ana Luisa Gil-Martínez; Alejandro Cisterna; Sonia García-Ruíz; Alicia Gómez-Pascual; Regina H. Reynolds; Mike A. Nalls; John Hardy; Mina Ryten; Juan A. Botía (Bioinform., 2021)

PhenoExam: gene set analyses through integration of different phenotype databases. - Alejandro Cisterna; Aurora González-Vidal; Daniel Ruiz; Jordi Ortiz; Alicia Gómez-Pascual; Zhongbo Chen; Mike A. Nalls; Faraz Faghri; John Hardy; Irene Díez; Paolo Maietta; Sara Álvarez; et al. (BMC Bioinform., 2022)

Paired plasma lipidomics and proteomics analysis in the conversion from mild cognitive impairment to Alzheimer's disease. - Alicia Gómez-Pascual; Talel Naccache; Jin Xu; Kourosh Hooshmand; Asger Wretlind; Martina Gabrielli; Marta Tiffany Lombardo; Liu Shi; Noel J. Buckley; Betty M. Tijms; Stephanie J. B. Vos; Mara ten Kate; et al. (Comput. Biol. Medicine, 2024)

Enhancing Omics Cohort Discovery for Research on Neurodegeneration through Ontology-Augmented Embedding Models. - José A. Pardo; Alicia Gómez-Pascual; José T. Palma; Juan A. Botía (CoRR, 2025)

MLASDO: a software tool to detect and explain clinical and omics inconsistencies applied to the Parkinson's Progression Markers Initiative cohort. - José A. Pardo; Tomás Bernal; Jaime Ñiguez; Ana Luisa Gil-Martínez; Laura Ibañez; José T. Palma; Juan A. Botía; Alicia Gómez-Pascual (CoRR, 2025)